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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN04698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 107aa MW: 12312.7 Da PI: 8.9204 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 5e-13 | 33 | 82 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ie + ++ + + R ++KKA+EL + C ++v ++ifsst klyey+s KHN04698.1 33 FIEKDYKKITVAATRTLQMIKKAKELAIFCTTQVGLVIFSSTRKLYEYAS 82 6777777777778888899*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.18E-12 | 32 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0017 | 32 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.381 | 34 | 84 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-9 | 34 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-7 | 46 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-7 | 61 | 82 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MIDCQVLQLR NDPNPAVREA AILCIEAILT CSFIEKDYKK ITVAATRTLQ MIKKAKELAI 60 FCTTQVGLVI FSSTRKLYEY ASTSFTKVPV FLIFLKYFSL HELVFYF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN04698.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0B2PAI5 | 1e-71 | A0A0B2PAI5_GLYSO; Agamous-like MADS-box protein AGL21 | ||||
STRING | GLYMA07G14363.1 | 2e-52 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF35550 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 5e-12 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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