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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN04335.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | YABBY | ||||||||
Protein Properties | Length: 214aa MW: 23919.3 Da PI: 7.5558 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 229.4 | 9.3e-71 | 11 | 178 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 d+ seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ +++ hl++s+ + ++ l+ + +++++ s+s++ ++ KHN04335.1 11 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQTNLSASNEFSM 109 577899***********************************************************9988666665555555555555555555555544 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +e+pr p ++rPPekrqrvPsaynrfik+eiqrik+ nPdi+hreafsaaaknWahfP+ihfgl KHN04335.1 110 PARIAADELPR-PIMNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGL 178 45667778887.668*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.4E-69 | 15 | 178 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-7 | 121 | 171 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.5E-4 | 127 | 170 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSSSSTTLSL DHLPPSEQLC YVHCNICDTV LAVSVPCTSL FKTVTVRCGH CTNLLPVNMR 60 GLLMPSPTQF HLGHSFFSPS HNLLEEIPNP SPNFLMNQTN LSASNEFSMP ARIAADELPR 120 PIMNRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDITHREA FSAAAKNWAH FPHIHFGLMP 180 DQTVKKTNVC QQEGEEVLMK DGFYASANVG VSPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN04335.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ617272 | 1e-167 | FJ617272.1 Lotus japonicus YABBY1 protein (YABBY1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344728.1 | 1e-160 | protein YABBY 7 isoform 1 | ||||
Refseq | XP_028231726.1 | 1e-160 | protein YABBY 4-like isoform X1 | ||||
Swissprot | Q01JG2 | 1e-80 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-80 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A0B2P539 | 1e-159 | A0A0B2P539_GLYSO; Protein YABBY 5 | ||||
TrEMBL | I1K0L1 | 1e-159 | I1K0L1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G04260.1 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 9e-82 | YABBY family protein |
Publications ? help Back to Top | |||
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