PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04240.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 189aa    MW: 21995.6 Da    PI: 10.2565
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04240.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.8e-181151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i n+s+r++t+ kR+ng++KK +E+S+LC++e + ii+s++
  KHN04240.1 11 IPNDSKRKTTLKKRKNGLMKKMNEISTLCGIETCAIIYSPN 51
                78*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.946151IPR002100Transcription factor, MADS-box
CDDcd002661.76E-21285No hitNo description
SuperFamilySSF554551.57E-24395IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MARKKLNLTY IPNDSKRKTT LKKRKNGLMK KMNEISTLCG IETCAIIYSP NDPQPEVWPS  60
DSGVQRVLSR FMEMPEVRQS RKMLNQESFL RQMITKGQQQ LTRQRNENRK KEMTNLMLQY  120
LTAGKVVGNP SLVDLNDLSW LIDQNLNEIE KKITMLQIQE VVIPVIENEG HMNHVQGLES  180
NMDTKKKQH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKLNLTYIPNDSKRKTTLKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028189230.11e-138agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-48AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0B2P4X51e-136A0A0B2P4X5_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA11G26260.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-50AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]