PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN04143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 132aa MW: 14482.8 Da PI: 11.83 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.8 | 5.6e-08 | 112 | 132 | 1 | 21 |
S---SHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngil 21 k+i+n + rqvtfskRr g++ KHN04143.1 112 KKIDNATARQVTFSKRRRGLF 132 68******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.984 | 104 | 132 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-9 | 104 | 132 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-8 | 106 | 126 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-6 | 113 | 132 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-8 | 126 | 132 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MALVSPRTTW PSRRLASPRC GTRATPATCT SSTSPRPCVT ALPPPAWFPS ASTLLASAMP 60 SPWALVACAK ASSPGTSLPT TSRPSWQRSD ARYYHCHEPW VVLMAREKVQ IKKIDNATAR 120 QVTFSKRRRG LF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN04143.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ594403 | 6e-98 | FJ594403.1 Glycine max dihydroxyacid dehydratase mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028215767.1 | 3e-84 | uncharacterized protein LOC114397913 | ||||
Refseq | XP_028215768.1 | 3e-84 | uncharacterized protein LOC114397913 | ||||
Refseq | XP_028215769.1 | 3e-84 | uncharacterized protein LOC114397913 | ||||
TrEMBL | A0A0B2P8Z0 | 1e-87 | A0A0B2P8Z0_GLYSO; MADS-box protein SVP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.2 | 2e-14 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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