PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03903.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 339aa    MW: 37582.3 Da    PI: 6.8277
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03903.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.1e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+ ++++G g+W++ ++  g++R++k+c++rw +yl
       KHN03903.1 14 KGPWTPEEDQKLVQHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.21.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
       KHN03903.1  67 RGKFSQEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.724961IPR017930Myb domain
SuperFamilySSF466893.12E-3211108IPR009057Homeodomain-like
SMARTSM007175.7E-161363IPR001005SANT/Myb domain
PfamPF002498.1E-181461IPR001005SANT/Myb domain
CDDcd001674.52E-131661No hitNo description
PROSITE profilePS5129427.27862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2765117IPR009057Homeodomain-like
SMARTSM007179.2E-1766114IPR001005SANT/Myb domain
PfamPF002492.3E-1667112IPR001005SANT/Myb domain
CDDcd001671.30E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVQHIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DLVSTLPYLL ALANMTDLMD HQTLDEHAIR LQAEAVHLAK LQYLHYLIRS  180
SNSLSTNKSY DQSATTNMEP AAFSLLNSIS NVKENPVMLQ PADDTPAASL SHGIVSSQPL  240
HHPNVLPHHL LEPQVSFSSQ SCLNSEIGQG TNFAIISQGD HTLDLDSSWI IPSITPPNAI  300
GTSANNPGDA SSSTSSYGGG PSSYWSELLF EDPILHELS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03903.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527903.10.0transcription factor MYB93
RefseqXP_028235752.10.0transcription factor MYB93-like
SwissprotQ9S9Z21e-117MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0B2P8960.0A0A0B2P896_GLYSO; Transcription factor MYB39
TrEMBLI1K9Y80.0I1K9Y8_SOYBN; Uncharacterized protein
STRINGGLYMA06G10840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-109myb domain protein 93
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]