PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN03861.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 222aa MW: 25582.9 Da PI: 6.6749 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++ F++ L H++ H KHN03861.1 33 FECVFCKRGFNTAQALGGHMNIH 55 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.59E-5 | 31 | 59 | No hit | No description |
Pfam | PF13912 | 1.9E-5 | 33 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.221 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEFSYQEDSS KSSSNEIDRS SEQNDETGTG RSFECVFCKR GFNTAQALGG HMNIHRKARA 60 NNSKAKPNFP PSSSSKVDHH ESNNYANPTY LTRGNHYSST LPDHREVDDV NYNYYHQLYF 120 PSPASGAKSP SHVQYSSEAL CVENQRDPHL PFGQDWRQRG LSLYTNPLCV HENKDKIENN 180 SEEDDLDLEL RLGWKQKEAR FLAWRLLQGR LQVRVSDEGR YF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN03861.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 2e-80 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028183892.1 | 1e-142 | zinc finger protein 10-like | ||||
TrEMBL | A0A445IHB1 | 1e-141 | A0A445IHB1_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA10G04010.2 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 3e-13 | C2H2 family protein |
Publications ? help Back to Top | |||
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