PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN03825.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 463aa MW: 51746.2 Da PI: 9.6413

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN03825.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H KHN03825.1 73 FVCEICNKGFQRDQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	12.3	0.00052	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ KHN03825.1 149 WKCEKCSKIYAVQSDWKAHSKTC 171 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	72	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.26E-6	72	95	No hit	No description
PROSITE profile	PS50157	10.949	73	95	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.3E-5	73	95	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	114	144	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.1E-4	137	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.26E-6	144	169	No hit	No description
SMART	SM00355	170	149	169	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MFPAVMSNSN SWSEEATVSC GTRITGLNHV VTTTISPQQP QKIKKKRNLP GNPDPDAEVI 60 ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKDVK KKAYVCPEPS 120 CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRKDSF ITHRAFCDAL AEESARLSAN QLATNTTTNP LVHSLFLLPT QQRNNNNNIN 240 FINPWDPNPN PSNLTTLHNN NIKPESHNFH IPNTSTNNNN NISSSLLHHH QQPNKRIITS 300 PYRDLHVRTQ PHPNAATSAH LSATALLQKA ATVGAAAITG PTLMTQLSMA ELGAVSTQLD 360 SVPMTVPLPP DQRYMNMRGL KNNNNDGLTR DFLGLTNGSA VDVSIDVKDM LTFTAGSIEY 420 NHRHQQQQSY EHHHSHNNLL FKPQQGFGFL GTTTGPESWG NCE

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MFPAVMSNSN SWSEEATVSC GTRITGLNHV VTTTISPQQP QKIKKKRNLP GNPDPDAEVI  60
ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKDVK KKAYVCPEPS  120
CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRKDSF ITHRAFCDAL AEESARLSAN QLATNTTTNP LVHSLFLLPT QQRNNNNNIN  240
FINPWDPNPN PSNLTTLHNN NIKPESHNFH IPNTSTNNNN NISSSLLHHH QQPNKRIITS  300
PYRDLHVRTQ PHPNAATSAH LSATALLQKA ATVGAAAITG PTLMTQLSMA ELGAVSTQLD  360
SVPMTVPLPP DQRYMNMRGL KNNNNDGLTR DFLGLTNGSA VDVSIDVKDM LTFTAGSIEY  420
NHRHQQQQSY EHHHSHNNLL FKPQQGFGFL GTTTGPESWG NCE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-36	145	209	3	67	Zinc finger protein JACKDAW
5b3h_F	4e-36	145	209	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN03825.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-180	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028183835.1	0.0	protein indeterminate-domain 12-like
Swissprot	O22759	1e-119	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A445IHM9	0.0	A0A445IHM9_GLYSO; Protein indeterminate-domain 12
STRING	GLYMA10G03541.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-110	indeterminate(ID)-domain 12

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]