PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03571.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 403aa    MW: 45803.4 Da    PI: 7.012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03571.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.6e-50471722128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ + +
  KHN03571.1  47 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSI 144
                 79***************************.89***************8778899********************************************* PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfy+g+apkg +t+W+m+eyrl
  KHN03571.1 145 GLKKTLVFYSGKAPKGIRTSWIMNEYRL 172
                 **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-5546192IPR003441NAC domain
PROSITE profilePS5100555.80446193IPR003441NAC domain
PfamPF023654.0E-2548172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAIAAANSSP TMSLSHSQSQ EDATTASTTN KPVDVDDNDD HEHDMVMPGF RFHPTEEELV  60
EFYLRRKVEG KRFNVELITF LDLYRYDPWE LPALAAIGEK EWYFYVPRDR KYRNGDRPNR  120
VTTSGYWKAT GADRMIRTEN FRSIGLKKTL VFYSGKAPKG IRTSWIMNEY RLPQHETERY  180
QKAEISLCRV YKRAGVEDHP SLPRCLPTRP SSSRASHDNN KKHNEMVQHN INMGFVGQLK  240
PPTTEHIVDK INETEASSDV NTALGLSKYN AAYRAAMGAL STTMALPVVP MDHEEGLMMM  300
QQQSKQAAAH VPTIFSAGPS SSNNSGVVNM DDLNRLMSYQ QQYYNVQSQS HPNQFSTLLM  360
QPSAVVSLSS LPNPLPPTFS DRLWDWNPIP EPPNQEYSNM SFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-554819319165NO APICAL MERISTEM PROTEIN
1ut4_B1e-554819319165NO APICAL MERISTEM PROTEIN
1ut7_A1e-554819319165NO APICAL MERISTEM PROTEIN
1ut7_B1e-554819319165NO APICAL MERISTEM PROTEIN
4dul_A1e-554819319165NAC domain-containing protein 19
4dul_B1e-554819319165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03571.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-150AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550460.10.0NAC domain-containing protein 35
RefseqXP_028209593.10.0NAC domain-containing protein 35-like
TrEMBLA0A445FZS30.0A0A445FZS3_GLYSO; NAC domain-containing protein 35 isoform A
TrEMBLA0A445FZS90.0A0A445FZS9_GLYSO; NAC domain-containing protein 35 isoform B
TrEMBLK7MJ700.0K7MJ70_SOYBN; Uncharacterized protein
STRINGGLYMA17G00650.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-111NAC domain containing protein 35
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]