PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN02496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27208.4 Da PI: 7.1163 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.4 | 2.3e-26 | 16 | 84 | 62 | 129 |
NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 + rd+kyatg r+nrat+sgyWkatgkd++v++ ++e+vg++ktLvfy++rap+g kt W+mhe+rle KHN02496.1 16 CFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPaTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 84 6799*****************************978888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.406 | 1 | 102 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-33 | 16 | 102 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-12 | 18 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MHPILAYLSH VLSGCCFRDR KYATGFRTNR ATTSGYWKAT GKDRTVVDPA TQEVVGMRKT 60 LVFYRNRAPN GIKTGWIMHE FRLETPHMPP KEDWVLCRVF HKSKEDDNMS SILVQYETIT 120 PPPSSLTLAS SSPTNQAMPH GGYNNRLASF SNSSMSTHQY HHHFNPTQQN ANSLMDLLHF 180 SRETNTNNTF LTQIGAKGDD AYGFLWDMDL TENSLEDGVA SNLDAIRFEV DNNNNNMVLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-22 | 18 | 102 | 82 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-22 | 18 | 102 | 82 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-22 | 18 | 102 | 82 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-22 | 18 | 102 | 82 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-22 | 18 | 102 | 82 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-22 | 18 | 102 | 82 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-22 | 18 | 102 | 82 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-22 | 18 | 102 | 82 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN02496.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236224 | 0.0 | AC236224.2 Glycine max clone GM_WBc0124O13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028217415.1 | 1e-167 | protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A445FHG8 | 1e-166 | A0A445FHG8_GLYSO; NAC domain-containing protein 21/22 | ||||
STRING | GLYMA19G34881.1 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-52 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
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