PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02379.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 512aa    MW: 57297.6 Da    PI: 6.9449
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02379.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32236292360
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  KHN02379.1 236 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGNIAEIVYKGEHNHSK 292
                 9***************************************.***************85 PP
2WRKY102.22.9e-32431488259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+ +dp+ +++tYeg+Hnhe
  KHN02379.1 431 GDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPRSFVTTYEGKHNHE 488
                 5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-29221293IPR003657WRKY domain
SuperFamilySSF1182902.22E-25233293IPR003657WRKY domain
SMARTSM007748.0E-37234292IPR003657WRKY domain
PfamPF031063.8E-25236290IPR003657WRKY domain
PROSITE profilePS5081123.617236293IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-33416490IPR003657WRKY domain
SuperFamilySSF1182902.62E-28423490IPR003657WRKY domain
PROSITE profilePS5081133.947425490IPR003657WRKY domain
SMARTSM007741.1E-37430489IPR003657WRKY domain
PfamPF031062.9E-25432488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MHIKEAERVV IAKPVASRPT CSTFKSFSEL LAGAINASPA IPSSQTTVSA IRPKTVRFKP  60
AMNQPPSGFV FSQADTFGAA LDNSSEMSPK LDTKQSLIYK PTAKLVSKTT VSLLANMRLL  120
STAMEDMNAF QLQLNYALAL VEPKEEEDEE QEEGEEEKVT PNTSRQQTQQ PMEANFQHSI  180
HEKFRTNTSS NLDQSITPQT EINYQSSEPS KMVQQNIEED QKVLTSSVNC DRPSYDGYNW  240
RKYGQKQVKG SEYPRSYYKC THPNCPVKKK VERSFDGNIA EIVYKGEHNH SKPQLHKRNS  300
AAGTQGSGVV SDGIVQDMWS NSHSERNEGN EVRIENTGLS MHSDYYVKVP RPNDSALNVG  360
ATNAGGVSTE NSCGLSGECE EGSKGFEAQE DEPRYKRRKN ENQSNEAALS EEGLVEPRIV  420
MQSFMDSEIL GDGFRWRKYG QKVVKGNPYP RSYYRCTNIK CNVRKHVERA IDDPRSFVTT  480
YEGKHNHEMP LKNTGTVASE RDSQASLSKD KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-31236490877Probable WRKY transcription factor 4
2lex_A7e-31236490877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312420.0KT031242.1 Glycine max clone HN_CCL_24 WRKY transcription factor (Glyma19g36100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304597.10.0WRKY transcription factor 44-like
RefseqXP_003554351.10.0WRKY transcription factor 44-like isoform X1
RefseqXP_025982735.10.0WRKY transcription factor 44-like isoform X1
RefseqXP_028215930.10.0WRKY transcription factor 44-like
TrEMBLA0A445FI030.0A0A445FI03_GLYSO; WRKY transcription factor 44
TrEMBLI1NA430.0I1NA43_SOYBN; WRKY transcription factor
STRINGGLYMA19G36100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.15e-95WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]