PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02271.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 444aa    MW: 51072.9 Da    PI: 6.9015
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02271.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.11.3e-24119217186
    trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                 +Wt+ +v++Li a+ +++++ ++++            +kk++W++vsk m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ +++++++  ++d ++
  KHN02271.1 119 KWTDTMVKLLIMAVYYIGDEAGSECtdptkkkasgllQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQTLLDTMD 217
                 7********************9988888889999999**********************************************55999**999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-21117242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEPNALGGGI FPNISSGLLG VENPLQPQQQ QQQPNLQNQR NPHPLHHPQM VSYATHHDTD  60
THHQQQPPQQ PIKHGYNFSA IKSSKSQSTL SDEDEPVFTA EDNSSGDPKR KVSPWHRMKW  120
TDTMVKLLIM AVYYIGDEAG SECTDPTKKK ASGLLQKKGK WKSVSKGMME KGYYVSPQQC  180
EDKFNDLNKR YKRVNDILGK GTACRVVENQ TLLDTMDLSP KMKEEVRKLL NSKHLFFREM  240
CAYHNSCGHN NNCGSTSQPP HQHQQQQCLH SSENGVGSLR MLKEDEDEDD DSEEFSDEDE  300
EESGEGGSRG MEEDENDVIR RRARNKGGFG VSSSQMMQQL SGEVSGVLQD GGKSAWEKKQ  360
WMKKRVVQLE EQQVSYQIQA FELEKQRLKW ARFSSKKERE MEKDKLQNER RRLEIERMVL  420
LLRHRELELV NVQQQQHQQQ HSST
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02271.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973680.0BT097368.1 Soybean clone JCVI-FLGm-21N20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336160.10.0SHOOT2 protein
TrEMBLA0A445FIH60.0A0A445FIH6_GLYSO; Uncharacterized protein
TrEMBLI1NAH60.0I1NAH6_SOYBN; Uncharacterized protein
STRINGGLYMA19G37410.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-91sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]