PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02256.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 1116aa    MW: 123616 Da    PI: 7.1122
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02256.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind895.7e-2835122399
                   HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikr 99 
                    +k++++++d++l+ +isw ++g sfvv+d++ fa++vLp+ Fkh+nf+SFvR Ln+Y F+k+++++         weF ++ F++gk++ll++i+r
    KHN02256.1  35 FSKTFDLVDDPSLDPIISWGSSGVSFVVWDRTLFARHVLPRNFKHNNFSSFVRLLNTYVFRKINTDK---------WEFFNEAFQRGKRHLLKNIRR 122
                   579*************************************************************999.........*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-4530123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-2834122IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3034123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.1E-133457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.4E-2636122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-137284IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-138597IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF484644.58E-38185313IPR008942ENTH/VHS
PROSITE profilePS5139134.462185313IPR006569CID domain
Gene3DG3DSA:1.25.40.902.7E-43186311IPR008942ENTH/VHS
SMARTSM005821.1E-43188310IPR006569CID domain
CDDcd035623.99E-38192301No hitNo description
PfamPF048185.2E-9241294IPR006903RNA polymerase II-binding domain
PROSITE patternPS000280970990IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1116 aa     Download sequence    Send to blast
MSSSQLPSSS PDFETVNSLP RPLECLQGNP VRALFSKTFD LVDDPSLDPI ISWGSSGVSF  60
VVWDRTLFAR HVLPRNFKHN NFSSFVRLLN TYVFRKINTD KWEFFNEAFQ RGKRHLLKNI  120
RRCGPPQSHQ VGSYIVPYSD AGKAGLEFEI ESLRKDRSVL MQEVLELQQQ QRTTLQCAKQ  180
PQPPPHQELV IQYKTALAEL TFNSKPIITN LTIIAGENLS AAKAIAATVC ANIIEVPSDQ  240
KLPSLYLLDS IVKNIGRDYI KYFASRLPEV FCKAYRQVDP CVHSSMKHLF GTWKGVFPPQ  300
SLQMIEKELG FAPAVNSSAS VSATDRSDLQ SQRPPHSIHV NPKYLERQRL QQSSRSKGVV  360
NDMTEAVLNS NEDLERPDRA LSAARPWLDP RINMLNNQHT HRDAFNDSVP EKSMDGSSYG  420
GSEYSSVISS NLGSGAGRTG SKLIDLGHDR TWFKTDGGDA DTTSGQRNGF NLKHSFSNHE  480
APKSMNLDAH CQPRQSITNK QNDVMSCNWK TSEEEEFMWD EIDNGLIDHG PNVSKTLSTD  540
TWMADVENLE GEDHLQITRP FGAKVNREIS TVKNQLPGLG GHPPSSWQLQ NLKPGYSEGF  600
VSSHSALPAN ASSLTVKKGN QSFMSNSVVG RVKFVGQQFD SGETESPSWQ SPLRQQSPSL  660
PGTVHHPHSM QNFADQELPQ NLKTSQFLGG PITQHIRDHS LTLRPIVQVG NLRRSQEKDM  720
QGPLSSMTSF RPKLQQKQLD PSQSKVSLTR ETSAQLTTNN LSAAPVKSGV IPKKSITCDP  780
DPRKHPSQTG VQPTQSGRPT TLDPLHNDSS TLPKNTQGKA GQPPQRLSTQ PPASSNISSS  840
SAPTLNTAKN NKLNPISNLL SSLVAKGLIS AETESPTMVP SEVPKGSKDQ TEIITTSCSL  900
PVTSISGSAA VPVSSSGDEV DSATKTSLAS PQSTSTEIRN LVGFDFRPNV IREFHPSVIR  960
ELWDDFPHNC KVCGIKLKQE ELFNRHLEWH ATREHGPIKA SRSWYAESSD WIAGKAEYSS  1020
ESGFNDSVDV HEQKTDSSQL DTMVLADENQ CLCVLCGELF EDAYCHERNE WMFKGAVYMN  1080
YSDVNCEMES RNVGPIIHAK CLSENSIVTN LVRPII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-193112226128Heat shock factor protein 1
5d5v_B4e-193112226128Heat shock factor protein 1
5d5v_D4e-193112226128Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02256.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604623.10.0uncharacterized protein LOC100811629 isoform X6
RefseqXP_028217921.10.0uncharacterized protein LOC114399899 isoform X2
TrEMBLA0A445FIR10.0A0A445FIR1_GLYSO; Polyadenylation and cleavage factor-like 4 isoform B
TrEMBLK7MZ660.0K7MZ66_SOYBN; Uncharacterized protein
STRINGGLYMA19G37600.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF436933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-43heat shock transcription factor A3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]