PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 360aa MW: 40079 Da PI: 7.4782

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN01996.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.1	7.8e-33	80	136	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct ++Cpvkkkvers +++v+ i+Y+geHnh+ KHN01996.1 80 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPNCPVKKKVERSL-EGHVTAIIYKGEHNHQ 136 8**************************************.*************8 PP
2	WRKY	107.4	7e-34	247	305	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+ KHN01996.1 247 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHD 305 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.0E-29	66	138	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-25	77	138	IPR003657	WRKY domain
SMART	SM00774	4.8E-36	79	137	IPR003657	WRKY domain
Pfam	PF03106	1.9E-25	80	136	IPR003657	WRKY domain
PROSITE profile	PS50811	23.766	80	138	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	9.8E-38	232	307	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-30	239	307	IPR003657	WRKY domain
PROSITE profile	PS50811	39.18	242	307	IPR003657	WRKY domain
SMART	SM00774	1.1E-39	247	306	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	248	305	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MTHQQALAQV SAQASQANSN MHIQAEHSLT QAPAAASNTT QQLMPPLTSD SWAAMTESID 60 HSHSEQRLQS SLLNVDKPAD DGYNWRKYGQ KQVKGSEFPR SYYKCTNPNC PVKKKVERSL 120 EGHVTAIIYK GEHNHQCPHP NKCSKDTMTS NENSNMQGNV DSTYQGTSTN SMSKMDPESS 180 QATADRLSGT SDSEEVADHE TEVDEKNVEP EPKRRKAEVS QSDPPSSHRT VTEPRIIVQT 240 TSEVDLLDDG YRWRKYGQKV VKGNPYPRSY YKCTTQGCNV RKHVERASTD PKAVITTYEG 300 KHNHDVPAAK TNSHTMASNT ASQLKSHNTN PEKHNFGSRG MGGNEQQPVA RLQLKEEQIT

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MTHQQALAQV SAQASQANSN MHIQAEHSLT QAPAAASNTT QQLMPPLTSD SWAAMTESID  60
HSHSEQRLQS SLLNVDKPAD DGYNWRKYGQ KQVKGSEFPR SYYKCTNPNC PVKKKVERSL  120
EGHVTAIIYK GEHNHQCPHP NKCSKDTMTS NENSNMQGNV DSTYQGTSTN SMSKMDPESS  180
QATADRLSGT SDSEEVADHE TEVDEKNVEP EPKRRKAEVS QSDPPSSHRT VTEPRIIVQT  240
TSEVDLLDDG YRWRKYGQKV VKGNPYPRSY YKCTTQGCNV RKHVERASTD PKAVITTYEG  300
KHNHDVPAAK TNSHTMASNT ASQLKSHNTN PEKHNFGSRG MGGNEQQPVA RLQLKEEQIT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-44	80	308	8	78	Probable WRKY transcription factor 4
2lex_A	4e-44	80	308	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN01996.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019557	0.0	EU019557.1 Glycine max WRKY9 (WRKY9) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520097.1	0.0	probable WRKY transcription factor 4
Refseq	XP_028202864.1	0.0	probable WRKY transcription factor 4
Swissprot	Q9ZQ70	1e-129	WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBL	A0A0B2NXW8	0.0	A0A0B2NXW8_GLYSO; Putative WRKY transcription factor 3
STRING	GLYMA02G12490.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1545	34	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-123	WRKY DNA-binding protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Aamir M, et al. Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach. Front Plant Sci, 2017. 8: p. 819 [PMID:28611792]