PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01962.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 238aa    MW: 26823.2 Da    PI: 9.1948
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01962.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.75.2e-4163137478
                 STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+
  KHN01962.1  63 AEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 137
                 79**********************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-3257122IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.29158135IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-3762139IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3063134IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLDYEWGNPS TIMLTGNEDS SAAGSDQTHR QIFDHYASHT LIPDHFLHAP MHSTATTVAT  60
TTAEGCNADL SQAKHYHRRH KVCEFHSKAA TVIAAGLTQR FCQQCSRFHL LSEFDNGKRS  120
CRKRLADHNR RRRKTQQPTQ EIQKSQSSLE NVARSPPDSG AQSSSSVTVA VSPPDYFRAI  180
PKHEPFIYYF KLIVFLKRKG KLDPSIWIFP EIGPVWFSGG VVAAEHGRSG LYTFILEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2953134384squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122291e-84KF312229.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134545.14e-73hypothetical protein PHAVU_010G056000g
RefseqXP_027906991.14e-73squamosa promoter-binding-like protein 8
TrEMBLA0A0B2P2P71e-179A0A0B2P2P7_GLYSO; Squamosa promoter-binding-like protein 8
STRINGXP_007134545.11e-72(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-45squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]