PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01942.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 343aa    MW: 38589 Da    PI: 6.7921
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01942.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.64.9e-3262115255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 prlrWtp+LH rFv+av++LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ++R+
  KHN01942.1  62 PRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMFRS 115
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-3058116IPR009057Homeodomain-like
PROSITE profilePS5129412.03658118IPR017930Myb domain
SuperFamilySSF466891.27E-1460116IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-2362117IPR006447Myb domain, plants
PfamPF002499.4E-963113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEERHGSQCS KTNPSNIDED EECESEANEE QSTQKNNGGS SSNSTVEENE KKIRPYVRSK  60
MPRLRWTPDL HLRFVHAVQR LGGQERATPK LVLQLMNVKG LSIAHVKSHL QMFRSKKVDD  120
RNQVFADYNN LVEIGDKNIY NISQLSMLQG YNPSQSSSFS YTNNYPCYGL GDASFGVYEK  180
LLQRPFDWSN AISREGSSIF GEQSKIREPK DEFLSFGAHD SLSARARLSH VDHIPPINIL  240
QQRAQKNTMP INPTTNPPEL KTLKRKASDT TLDLDLSLKL NSKINDAEEG TLKNHEVDST  300
NLSLSLCSQS SSSNNPISRL IKEAQQDRCD EQGKMASTLD LAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1863117357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1863117357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1863117357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1863117357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150427e-75AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028237004.10.0two-component response regulator ARR18-like
TrEMBLA0A0B2P2N20.0A0A0B2P2N2_GLYSO; Putative Myb family transcription factor
STRINGGLYMA01G31044.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-55G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]