PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01882.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 205aa    MW: 23369.1 Da    PI: 7.3473
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01882.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.42.1e-1068942551
     G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQ 51
                ++A Pk+il+lm+ +gLt+e+v+SHLQ
  KHN01882.1 68 QHAFPKRILDLMNGEGLTRENVASHLQ 94
                6799*********************** PP
2Response_reg21.98.6e-0986543109
                   HESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  43 dpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   ++Dl+  D++mp+mdGl+ll+     ++ lp+i          + + +  Ga ++l+Kp+ +eel +
    KHN01882.1   8 KFDLLTSDVNMPDMDGLKLLELVGL-QMGLPVIK--------RVMRGVIQGACEYLTKPVRIEELQN 65 
                   69******************98844.34799984........4566678899999999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.486171IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.38E-11771No hitNo description
Gene3DG3DSA:3.40.50.23002.4E-13771No hitNo description
PfamPF000726.8E-6765IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.56E-13775IPR011006CheY-like superfamily
TIGRFAMsTIGR015575.5E-96894IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.7E-87294IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLRKNINKFD LLTSDVNMPD MDGLKLLELV GLQMGLPVIK RVMRGVIQGA CEYLTKPVRI  60
EELQNIWQHA FPKRILDLMN GEGLTRENVA SHLQSALGKD IEQQPTLLEE YHLRNKSERS  120
PATYISSHGF IENSHFPEGK EALNGAMEEL KDGYIYENGK LVVHFLQAIH AAEKRQADLD  180
VHVSNEQKKL LKVFPIKNHP LKLVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352252e-83AC235225.1 Glycine max strain Williams 82 clone GM_WBb0024J22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0B2P2I01e-149A0A0B2P2I0_GLYSO; Two-component response regulator ARR12
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-29response regulator 12
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]