PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01669.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 576aa    MW: 64279.9 Da    PI: 6.7623
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01669.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.33e-27338391256
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv++Lt+++v+SHLQkYR++
  KHN01669.1 338 IKVDWTPELHKKFVKAVEQL-GIDQAIPSRILELMKVESLTRHNVASHLQKYRMH 391
                 5899****************.********************************96 PP
2Response_reg23.62.7e-09441492109
                   EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   l+ + +++ +  +r  le  +y +v ++ d  +al  +      +++ ++ ++ +    G+++l++   + ++lp i+ + +   +++ +++ +Ga 
    KHN01669.1  44 LLHERDNISAAEIRAKLEAMDY-NVSTFCDENDALSVISSGLesFHIAIVEVSSSSaQGGFKFLEN---A-KDLPTIMTSNNHCLNTMMKCIALGAV 135
                   5556667777788999999***.***************665556*******999996677777754...3.4799999999999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +flsKp ++++l++
    KHN01669.1 136 EFLSKPLSEDKLRN 149
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.97E-1339158IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-1339186No hitNo description
PROSITE profilePS5011019.48742155IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-644150IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.71E-749154No hitNo description
PROSITE profilePS5129415.135334393IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-26335394IPR009057Homeodomain-like
SuperFamilySSF466894.93E-18336394IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-24337392IPR006447Myb domain, plants
PfamPF002492.1E-7340389IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MLISGIDRSV TFCGRLRNDA KPAMVFTAND LQEWKDFPKG LKVLLHERDN ISAAEIRAKL  60
EAMDYNVSTF CDENDALSVI SSGLESFHIA IVEVSSSSAQ GGFKFLENAK DLPTIMTSNN  120
HCLNTMMKCI ALGAVEFLSK PLSEDKLRNI WQHVVHKAFN AGANILSESL KPVKESVASM  180
LQLQTDNEQH ESRVSIDIEK VSSFVDNDHE LSPGNDKYPA PSTPQLMQGT RLLDDGDCQE  240
QANCSTEKES GEHDGESKSV ETTCGNLNAE ITPQQRKSEI TLVREEVDIV DASMGESVAS  300
PHTQKRKVLS NTDRNTKASN KVGVHSDSCE IRGKRKKIKV DWTPELHKKF VKAVEQLGID  360
QAIPSRILEL MKVESLTRHN VASHLQKYRM HKRQILPKEE ERKWSNQRER SYSVQRPIMA  420
FPPYHSNHTH PLPPVYPMWG QSGGPMAGMQ IWGSPGYPLW QPTAENWRWK PFPGMHADAW  480
GCPVLPIPPQ APGFPYSQNM PALLNADAAD HTFTMPQSSF EHYLAEEVVD KVVKEAINKP  540
WLPLPLGLKP PSTESVLAEL SRQGISNIPP KGSKSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-16342391655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-163AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550939.10.0two-component response regulator-like APRR2
RefseqXP_028211258.10.0two-component response regulator-like APRR2
SwissprotQ6LA431e-138APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A445G7390.0A0A445G739_GLYSO; Two-component response regulator-like APRR2 isoform A
TrEMBLI1MVC20.0I1MVC2_SOYBN; Uncharacterized protein
STRINGGLYMA17G16360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-135ARR-B family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]