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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29015.3 Da PI: 10.4053 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.3 | 8.3e-23 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n+sn qvtfskRr g++KKA+EL++LC+a+va+++fs+ k++ + KHN01568.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSF 64 5689***************************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.824 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-33 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.37E-37 | 9 | 78 | No hit | No description |
SuperFamily | SSF55455 | 9.55E-29 | 9 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-19 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-24 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-19 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-19 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSGPKKSRGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGADV ALVVFSPGEK 60 VFSFGHPNVD AVIDRYLERA PPTESFMEAH RMAHVRDLNA QLTQISNHNV RELNAQLTQI 120 NNHLNNERKR AEELNLMKKG AQAQLWWARP LDGMSIAQLK QFKAALEELK KQVARLADRA 180 MLQSVTNPTL QFFPGVSSSS NSNLVHQQHP LQPQVFPPHL IQPPMLQHFM FHDGSMMRHH 240 GFNNMGMGGY GPAFDSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-17 | 9 | 85 | 2 | 78 | MEF2 CHIMERA |
6byy_B | 1e-17 | 9 | 85 | 2 | 78 | MEF2 CHIMERA |
6byy_C | 1e-17 | 9 | 85 | 2 | 78 | MEF2 CHIMERA |
6byy_D | 1e-17 | 9 | 85 | 2 | 78 | MEF2 CHIMERA |
6bz1_A | 1e-17 | 9 | 85 | 2 | 78 | MEF2 CHIMERA |
6bz1_B | 1e-17 | 9 | 85 | 2 | 78 | MEF2 CHIMERA |
6bz1_C | 1e-17 | 9 | 85 | 2 | 78 | MEF2 CHIMERA |
6bz1_D | 1e-17 | 9 | 85 | 2 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01568.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 2e-71 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555307.1 | 1e-170 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_028220436.1 | 1e-170 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-55 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0B2P1N7 | 0.0 | A0A0B2P1N7_GLYSO; Agamous-like MADS-box protein AGL62 | ||||
STRING | GLYMA20G27330.1 | 1e-169 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-58 | AGAMOUS-like 62 |