PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01468.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 262aa    MW: 29513.4 Da    PI: 10.6669
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01468.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.21.6e-112455233
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCda 33
                ++e   +r+vtfskR+ g++ K  ELSvLC +
  KHN01468.1 24 KVEQINRRYVTFSKRKLGLFNKLTELSVLCVV 55
                5677889***********************66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-41569IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.251553IPR002100Transcription factor, MADS-box
CDDcd001201.06E-121653No hitNo description
PRINTSPR004045.3E-81737IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-101755IPR002100Transcription factor, MADS-box
PfamPF003197.9E-102555IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-83752IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MASFGANTAT KPIKKRKRTI EIKKVEQINR RYVTFSKRKL GLFNKLTELS VLCVVRRYLN  60
GGLPRRLDSA CKKRQQDAIE TLRLEYEATQ NHLKEEQKRL QEIKETRKSS LRFPSWWNLP  120
TEGMGLEDLE QFKTSLERLK FNLVGALQEK QMNSVPSMPH AAMLPPMSST MVPPMPSTVV  180
PPVPHAAMVP PMSSTMVPPM PHAAMVPPMM PPQFQSMPLL SAQRLSGNQV QDDYWRSAAI  240
ASTSSTFASN GFGSLKSYGY TT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318KKRKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529855.10.0agamous-like MADS-box protein AGL62
RefseqXP_028240776.10.0agamous-like MADS-box protein AGL62
TrEMBLA0A445JS950.0A0A445JS95_GLYSO; Agamous-like MADS-box protein AGL62
TrEMBLK7KZN20.0K7KZN2_SOYBN; Uncharacterized protein
STRINGGLYMA07G05031.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-10AGAMOUS-like 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]