PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01256.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 279aa    MW: 31992.3 Da    PI: 9.2579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01256.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.8e-5491341128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp k++ +ekewyfFs+r++ky++g r+nrat sgyWkatg+dk+++s ++++
  KHN01256.1   9 LPPGFRFHPTDEELIVYYLCNQASSRPCPA-SIIPEVDIYKFDPWELPDKTDFGEKEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYS-GSKH 105
                 79****************************.89***************99999*****************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kk Lvfykg+ pkg ktdW+mheyrl
  KHN01256.1 106 VGVKKALVFYKGKPPKGLKTDWIMHEYRL 134
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-665161IPR003441NAC domain
PROSITE profilePS5100560.7559161IPR003441NAC domain
PfamPF023651.5E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MENRTSSVLP PGFRFHPTDE ELIVYYLCNQ ASSRPCPASI IPEVDIYKFD PWELPDKTDF  60
GEKEWYFFSP RERKYPNGVR PNRATVSGYW KATGTDKAIY SGSKHVGVKK ALVFYKGKPP  120
KGLKTDWIMH EYRLIGSRRQ ANRQVGSMRL DDWVLCRIYK KKNIGKSMEA KEDYPIAQIN  180
LTPANNNSEQ ELVKFPRTSS LTHLLEMDYL GPISHILSDA TYNSTFDFQI NTANGGIDPF  240
VKPQLVEIPY ATDSGKYQVK QNSTINPTIF VNQVYDQRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-73516313167NO APICAL MERISTEM PROTEIN
1ut4_B5e-73516313167NO APICAL MERISTEM PROTEIN
1ut7_A5e-73516313167NO APICAL MERISTEM PROTEIN
1ut7_B5e-73516313167NO APICAL MERISTEM PROTEIN
4dul_A5e-73516313167NAC domain-containing protein 19
4dul_B5e-73516313167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01256.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0287690.0DQ028769.1 Glycine max NAC domain protein NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236855.10.0NAC domain protein NAC1
RefseqXP_028230950.10.0NAC transcription factor 29-like isoform X1
SwissprotK4BNG71e-115NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A445LZ570.0A0A445LZ57_GLYSO; NAC transcription factor 29 isoform A
TrEMBLQ52QR50.0Q52QR5_SOYBN; NAC domain protein NAC1
STRINGGLYMA01G06150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-115NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]