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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01179.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 484aa MW: 53227.1 Da PI: 6.8634 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 7e-31 | 171 | 230 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ KHN01179.1 171 MNDGCQWRKYGQKMAKGNPCPRAYYRCTASpSCPVRKQVQRCAEDMSILITTYEGTHNHP 230 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-32 | 157 | 232 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 164 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.736 | 166 | 232 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-37 | 171 | 231 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-27 | 172 | 230 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MQDQNLESAK GEKGETREEN KMLEFYGILH HDKPDDATNA KGVFSHIEEN EESELVSLSL 60 GISISKGKPS KNEKMINNGI EKREDEDVHK RLVLGLDINL DPVDQDELAA NNSTPESSFG 120 EGGKEDEPTE MWPPSKVSKT MKSEDKSEAS PHYQPKKTRV SIRARCDTQT MNDGCQWRKY 180 GQKMAKGNPC PRAYYRCTAS PSCPVRKQVQ RCAEDMSILI TTYEGTHNHP LPMSATAMAC 240 TTSAAASMLQ SPSLSSQHGL VDSAISSIIN SSAANYYNPN NALNFSTHQV SRPNQFYFSN 300 SSISTLNSHP TITLDLTAPP TSSNSSFTHM PKYSSTNLNF SSGFSPLHSS MPQSPWSSYN 360 YFNSGTLSQN RKHGGNYLLN TGNQNQPHSL GNLHQPIYMR SNTISQHSLP DPIVAATKAI 420 TSNPKFQSAL ATALTTYVGN EAGGGRLREN HVLESAELMN LKLCSENSIG NSSIVQLPLL 480 EQWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-21 | 158 | 232 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01179.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-102 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014617466.1 | 0.0 | probable WRKY transcription factor 61 | ||||
Refseq | XP_028230555.1 | 0.0 | probable WRKY transcription factor 61 | ||||
TrEMBL | A0A445LYN1 | 0.0 | A0A445LYN1_GLYSO; Putative WRKY transcription factor 72 isoform A | ||||
TrEMBL | I1J5L7 | 0.0 | I1J5L7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G05050.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 5e-53 | WRKY DNA-binding protein 61 |
Publications ? help Back to Top | |||
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