PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN01093.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 200aa MW: 22977.9 Da PI: 10.1632

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN01093.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66.7	6.9e-21	26	104	57	128
NAM 57 ewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +fF++ +k+y+tg+rk+r+++ + +W++tgk+++v++ +l+g kk+Lv+y g+++k+ekt+Wvmh+y+l KHN01093.1 26 IRHFFHRPSKAYTTGTRKRRKVHsdedgsETRWHKTGKTRPVYN-IAKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 104 459***************855455555778********.8999******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	22.837	1	123	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-22	22	123	IPR003441	NAC domain
Pfam	PF02365	5.6E-8	28	104	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MPFRERGYYP STNLAITAGV SKDGLIRHFF HRPSKAYTTG TRKRRKVHSD EDGSETRWHK 60 TGKTRPVYNI AKLKGYKKIL VLYTNYGKQR KPEKTNWVMH QYHLGSDEEE KEGELVVSKV 120 FYQTQPRQCG SLMKDSSVPP GKHMKGQSVH VEVMNNNKNS NNNGYVEYYH SSNFISFDQG 180 GQNAQVISHF PVHEGAPFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN01093.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235102	0.0	AC235102.1 Glycine max strain Williams 82 clone GM_WBa0006K18, complete sequence.
GenBank	AC235165	0.0	AC235165.1 Glycine max strain Williams 82 clone GM_WBa0104E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003526260.1	1e-133	NAC domain-containing protein 73
Refseq	XP_028238079.1	1e-133	NAC domain-containing protein 73-like
Swissprot	O49459	6e-67	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0B2P0K5	1e-148	A0A0B2P0K5_GLYSO; NAC domain-containing protein 8
STRING	GLYMA06G44250.2	1e-133	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19879	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	9e-69	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]