PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00925.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 422aa    MW: 46403.5 Da    PI: 10.5282
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00925.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.81.4e-081201683786
    trihelix  37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 k re++ ++s +qCk+k++nl+kryk + ++ +++   ++s++ +f+++e
  KHN00925.1 120 KGREGKHQKSVEQCKNKIDNLKKRYKVELQRIGSG-GIATSHWHWFKKIE 168
                 3489999*************************999.556669*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-9116170No hitNo description
Gene3DG3DSA:3.40.1160.102.8E-40246401IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.07E-27252401IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006968.6E-8255400IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046939Biological Processnucleotide phosphorylation
GO:0016021Cellular Componentintegral component of membrane
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSRRSDETAV TEEAPPKQSL PNLFSLFPKI NFQLPFLPPK PKPKPQEPNP QAQQEGPKPS  60
RVQFPKTQVA VVASSPLQAE PDADHSPAAK TTNPLILWQI YAIGAIAISS WVWARWNERK  120
GREGKHQKSV EQCKNKIDNL KKRYKVELQR IGSGGIATSH WHWFKKIEAI VGNSLSVKTV  180
SDDDKAGSSG AAAANSPSMA RQTKNSWLFK ACYAVRHWDG LLTISDKFVG RYAPSNATVA  240
INLKLKPASN LKWHRVLFKI SGSALAGNCQ NIDPKVAMQI AREVATTCRL GVEVAIVVGG  300
RNFFCGDAWV SATGLDRPMA YQIGMMGTVM NSILLQSALE KLGVQTRVQN TFLMPEVAEP  360
YSRQRAIRHL EKGRVIFGGV GAGTGNPHFT TDTAAALRAS ERMTLHFHLS IASLVLLFLC  420
QF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A7e-4025340150195Uridylate kinase
3nwy_B7e-4025340150195Uridylate kinase
3nwy_C7e-4025340150195Uridylate kinase
3nwy_D7e-4025340150195Uridylate kinase
3nwy_E7e-4025340150195Uridylate kinase
3nwy_F7e-4025340150195Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00925.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589369.11e-166uncharacterized protein LOC100791426 isoform X2
RefseqXP_028183563.11e-166uncharacterized protein LOC114370413 isoform X2
TrEMBLA0A445IPZ51e-178A0A445IPZ5_GLYSO; Uridylate kinase isoform B
STRINGGLYMA10G34520.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.25e-86Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]