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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
KHN00205.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 163aa MW: 19188.5 Da PI: 9.3686 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KHN00205.1 | genome | TCUHK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 41.7 | 1.4e-13 | 9 | 41 | 15 | 47 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47
kR + KKA+EL vLCda+v++i+fsstgkl+
KHN00205.1 9 KRIENTTKKANELTVLCDAKVSIIMFSSTGKLH 41
7888888*************************8 PP
|
| 2 | K-box | 58.8 | 2.3e-20 | 62 | 133 | 1 | 74 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74
yq + g++ +++++e++q++l+kLk+ ++nL++e ++G++L++L +++L+ Le+ ++k+ k +R++K +l++
KHN00205.1 62 YQMTLGVDIWNSHYENMQENLKKLKEVNRNLRKE--FRMGDCLNELGMEDLRLLEEGMDKAAKVVRERKVRLII 133
67788899*************************9..67*******************************99875 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MARGKIQIKR IENTTKKANE LTVLCDAKVS IIMFSSTGKL HKIEQSYVFF ILYLNKAIFD 60
QYQMTLGVDI WNSHYENMQE NLKKLKEVNR NLRKEFRMGD CLNELGMEDL RLLEEGMDKA 120
AKVVRERKVR LIICSYLYTS CNQASYPVHM LFENKSKDLK FCI
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| UniProt | Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC235211 | 6e-89 | AC235211.1 Glycine max strain Williams 82 clone GM_WBb0019L21, complete sequence. |
| Publications
? help Back to Top |
- Immink RG, et al.
Analysis of the petunia MADS-box transcription factor family.
Mol. Genet. Genomics, 2003. 268(5): p. 598-606
[PMID:12589434] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Qi X, et al.
Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
Nat Commun, 2014. 5: p. 4340
[PMID:25004933] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751] - Kush A,Brunelle A,Shevell D,Chua NH
The cDNA sequence of two MADS box proteins in Petunia.
Plant Physiol., 1993. 102(3): p. 1051-2
[PMID:8278527]
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