PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99908.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 363aa    MW: 41203.9 Da    PI: 5.9271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99908.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.5e-29134194259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ynWrKYGqK++ g+++prsYYrCt++   gC+++k+v+rs+edp+v++itY+g+H+++
  KHM99908.1 134 EDSYNWRKYGQKDILGAKYPRSYYRCTFRntqGCWATKQVQRSDEDPTVFDITYRGKHTCS 194
                 8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.527128191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-28130195IPR003657WRKY domain
SuperFamilySSF1182904.05E-25132195IPR003657WRKY domain
SMARTSM007747.9E-40133195IPR003657WRKY domain
PfamPF031067.3E-26134193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MESDLSWEQN TLINELIQGM EVARKLKADL RMPYSVDSRD LLVQRILSSY EKALLILRCN  60
ASSTSELQAM SQATPTLLPE SPLSVHGSPL REDVDGTIKD HQEVKHDSKK RKATPKWMDH  120
VRVSCESGLE GPHEDSYNWR KYGQKDILGA KYPRSYYRCT FRNTQGCWAT KQVQRSDEDP  180
TVFDITYRGK HTCSQGNNAV LPPKSPEKQE KPTHSHNIDI HRAQASQESL TKFRNILSVN  240
TDNLNNGDMA YPFTFPSTSF GCMKQDNHSL IPWALENESF LSDLYQTHLL STTIPESNYF  300
PSPTFQMNVF DGIYSKPHSE SDINEIISTN TSATNSPIPD FNFSLDPVEI DPNFPFNTPG  360
LFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-181351911874Disease resistance protein RRS1
5w3x_D2e-181351911874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99908.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312350.0KT031235.1 Glycine max clone HN_CCL_109 WRKY transcription factor (Glyma08g02580.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525349.10.0probable WRKY transcription factor 41
RefseqXP_028233666.10.0probable WRKY transcription factor 41
TrEMBLA0A445KRT90.0A0A445KRT9_GLYSO; Putative WRKY transcription factor 41 isoform A
TrEMBLI1K6A30.0I1K6A3_SOYBN; Uncharacterized protein
STRINGGLYMA05G36970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-74WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]