PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 324aa MW: 35375.6 Da PI: 5.1812

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHM99690.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.1	1.3e-15	244	305	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +ke+kr +r+ +NR++A+ R+RKka++ Le++vk Le++N++Lk++l++l++e + l++ KHM99690.1 244 DKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQI 305 689******************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57850	4.41E-31	23	109	No hit	No description
Gene3D	G3DSA:3.30.40.10	1.4E-29	24	113	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF14569	2.4E-34	29	105	IPR027934	Cellulose synthase, RING-type zinc finger
PROSITE profile	PS50089	8.978	39	85	IPR001841	Zinc finger, RING-type
SMART	SM00338	5.0E-17	244	308	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.7E-14	245	306	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.702	246	309	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-16	248	308	No hit	No description
SuperFamily	SSF57959	5.31E-13	248	306	No hit	No description
CDD	cd14704	1.44E-20	249	300	No hit	No description
PROSITE pattern	PS00036	0	251	266	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0016760	Molecular Function	cellulose synthase (UDP-forming) activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MERSGGMVTG SHERNELVRV RHGSDSRSKP LKNLNGQSCQ ICGDTIGLMA TGDVFVACHE 60 CGFPLCHSCY EYELKHMSQS CPQCKTAFTS HQEGAEVEGD DDDEDDADDL DNEINYGQGN 120 SSKAGMLWEE DADLSSSSGH DSQIPNPHLA NGQPMSGEFP CATSDAQSMQ TTSIGQSEKV 180 HSLSYADPKQ PGPESDEEIR RVPEIGGESA GTSASQPDAG SNAGTERVQG TGEGQKKRGR 240 SPADKESKRL KRLLRNRVSA QQARERKKAY LIDLETRVKD LEKKNSELKE RLSTLQNENQ 300 MLRQILKNTT ASRRGSNNGT NNAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1weo_A	8e-24	26	88	6	68	cellulose synthase, catalytic subunit (IRX3)
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHM99690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093548	0.0	BT093548.1 Soybean clone JCVI-FLGm-17O14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028245808.1	0.0	cellulose synthase A catalytic subunit 1 [UDP-forming]-like
TrEMBL	A0A445JMC2	0.0	A0A445JMC2_GLYSO; Transcription factor HY5 isoform A
STRING	GLYMA08G41450.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7064	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	4e-57	bZIP family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]