PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MIKC_MADS

Protein Properties

Length: 243aa MW: 27983.5 Da PI: 9.8046

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHM99620.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.4	6e-31	24	73	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+ KHM99620.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 73 79***********************************************8 PP
2	K-box	107.1	2.1e-35	92	188	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s+ +s++ea+++ +qqe++kL+++i+ +q+ +Rh+lGe L+sLslkeL++Le +Lek+l+++Rs+K+e l++ +e +qk+e elq++n++Lr+k++e KHM99620.1 92 SNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAE 188 445559****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.9E-41	16	75	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.796	16	76	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-32	17	89	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.74E-42	17	84	No hit	No description
PROSITE pattern	PS00350	0	18	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-32	18	38	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-26	25	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-32	38	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-32	53	74	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.0E-25	99	186	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.446	102	192	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEDPNQAPEA SSQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 VVFSTRGRLY EYANNSVRAT IERYKKANAA ASNAESVSEA NTQFYQQESS KLRRQIRDIQ 120 NLNRHILGEA LGSLSLKELK NLEGRLEKGL SRVRSRKHET LFADVEFMQK REIELQNHNN 180 YLRAKIAEHE RAQQQQSNMN MSGTLCESLP SQSYDRNFFP VNLIASDDQQ QYSRQDHTAL 240 QLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	8e-21	16	88	1	73	MEF2C
5f28_B	8e-21	16	88	1	73	MEF2C
5f28_C	8e-21	16	88	1	73	MEF2C
5f28_D	8e-21	16	88	1	73	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHM99620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU252564	0.0	EU252564.1 Glycine max agamous-like 1 protein (AGL1L) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001240100.1	1e-180	agamous-like MADS-box protein AGL1-like
Refseq	XP_006584622.1	1e-180	agamous-like MADS-box protein AGL1-like isoform X3
Refseq	XP_025985173.1	1e-180	agamous-like MADS-box protein AGL1-like isoform X4
Refseq	XP_028245897.1	1e-180	agamous-like MADS-box protein AGL1 isoform X1
Refseq	XP_028245898.1	1e-180	agamous-like MADS-box protein AGL1 isoform X2
Refseq	XP_028245899.1	1e-180	agamous-like MADS-box protein AGL1 isoform X2
Swissprot	Q93XH4	1e-120	MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBL	A0A445JMI9	1e-179	A0A445JMI9_GLYSO; Agamous-like MADS-box protein AGL1 isoform A
TrEMBL	E3NYN5	1e-179	E3NYN5_SOYBN; Agamous-like 1 protein
TrEMBL	I1KY27	1e-179	I1KY27_SOYBN; Uncharacterized protein
STRING	GLYMA08G42300.1	1e-179	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF684	29	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	1e-112	MIKC_MADS family protein

Publications ? help Back to Top
Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]