PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM99331.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 35120.9 Da PI: 10.2795 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 39 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT +E++++++a +++ + Wk+I + +g +t q++s+ qky KHM99331.1 39 RENWTDQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 83 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.09E-16 | 33 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.797 | 34 | 88 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.4E-17 | 37 | 86 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 37 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-11 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-11 | 39 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.11E-8 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVSLNLNPNP PQTFHFFDPF NMEDQNKKVR KPYTITKSRE NWTDQEHDKF LEALHLFDRD 60 WKKIEAFVGS KTVIQIRSHA QKYFMKVQKN GTSEHVPPPR PKRKAAHPYP QKASKNALTI 120 SQVARPLQSS SALSESSHIY RPDSSSVVRT PVSSVPLPSW VYNVTPPVSL PRVTKDDMVL 180 MSQQINPFSS SNESTPRGWP ISKQTDQGDQ GKPTIVMPDF AQVYSFIGTV FDPNAINHLQ 240 RLKQMDPINV KTILLLMRNL STNLRSPEFE NERRMLSLYY ANMEKEKSSS HRSQPLTDRS 300 ESVVLSA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM99331.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 8e-53 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028212645.1 | 0.0 | protein REVEILLE 6-like | ||||
Swissprot | Q8H0W3 | 2e-95 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0B2NV40 | 0.0 | A0A0B2NV40_GLYSO; Protein REVEILLE 6 isoform A | ||||
STRING | GLYMA18G47230.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.1 | 2e-76 | MYB_related family protein |
Publications ? help Back to Top | |||
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