PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM98903.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 300aa    MW: 33790.3 Da    PI: 8.4211
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM98903.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.2e-321972255
     G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                prlrWtpeLH++Fv a+e LGG+ kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  KHM98903.1 19 PRLRWTPELHRCFVYAIETLGGHYKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72
                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-301573IPR009057Homeodomain-like
PROSITE profilePS512949.511575IPR017930Myb domain
SuperFamilySSF466892.15E-151773IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-221973IPR006447Myb domain, plants
PfamPF002492.2E-72071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGSCGREGVV RQYIRSKVPR LRWTPELHRC FVYAIETLGG HYKATPKLVL QLMDVKGLTI  60
SHVKSHLQMY RSMKGDRSCR QDRTSTQHRK QSFQKHDDRF VDEVSDVGFH SCFKSIKKES  120
DSLSSCTNFS SKRARIEKTS LLSGILQCSQ RICEAVPNPY TTFYDYQQSM AEQKGIKKIC  180
VCSIWQQTQP LSTTFPMLPK QESDFLQVAK LNDKHPLNEV GNTWRVGLGA EDEDIEGCEL  240
SLSISLPQPH PSSQKSNNAS SVSETSEAFS LCPEFSNNYM GCSSSSNVPK TINLDLSLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM98903.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633543.10.0putative Myb family transcription factor At1g14600
RefseqXP_028238651.10.0putative Myb family transcription factor At1g14600
TrEMBLA0A0B2NUF10.0A0A0B2NUF1_GLYSO; Putative Myb family transcription factor
TrEMBLK7L2070.0K7L207_SOYBN; Uncharacterized protein
STRINGGLYMA07G19585.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.17e-35G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]