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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK45123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 575aa MW: 63827.1 Da PI: 4.6449 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.8 | 4.6e-49 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 +pGfrFhPtdeelv++yLk+k+ +k+l++ +vi vd+yk+eP++Lp + +k+++++w++F++r++ky++ r+ r t sgyWkatgkd+ + +++ KFK45123.1 17 APGFRFHPTDEELVMYYLKRKICNKRLRI-NVIGVVDVYKLEPEELPgQsVLKTGDRQWFYFTPRSRKYPNAARSGRCTGSGYWKATGKDRVIEY-NSR 113 69***************************.99**************96347788999************************************99.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vglkktLvfy+grap+ge+tdWvmhey++ KFK45123.1 114 SVGLKKTLVFYRGRAPNGERTDWVMHEYTM 143 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.067 | 16 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-56 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-25 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MADSSPDSCF KEGKFIAPGF RFHPTDEELV MYYLKRKICN KRLRINVIGV VDVYKLEPEE 60 LPGQSVLKTG DRQWFYFTPR SRKYPNAARS GRCTGSGYWK ATGKDRVIEY NSRSVGLKKT 120 LVFYRGRAPN GERTDWVMHE YTMDEEELGR CKNVKDYYAL YKMFKKSGAG PKNGEQYGAP 180 FQEEEWVDDD NEDGNNIAAV EGPVVQYDVP RRVDDGRLFN PVHLQLEDID EILNGIPDAP 240 GVPTRCINGL ASSIPWVNSD EELQSTLVNN SVREFPNARH IQGFWPNGQP YNRPSSYGSL 300 VSANSLEATE VTSAPKNSSM ASLVFEKENY IEMDDLLTPE HGASSTEKSA QVLNHGESSD 360 EFDQLFYDVS MSLDMDPILQ GTSTDLSSLG NFANNTSDQR QQFVYPQVEG QTSENQLNNF 420 VGPSPTLDQF VDDLWLQDDQ AVLFDQPQSF AGAFASPSSG LLPDSANPTV TVNAQDQEGQ 480 NGGESPFSSA LWAFMDSIPS TPASACEGPL NRTFVRMSSF SRIRFSGKAN GTPVTTTVAK 540 KRGSRNRGIL LLSIVGVLCA ILWVFIATVP RAVVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-44 | 16 | 143 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK45123.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020868493.1 | 0.0 | LOW QUALITY PROTEIN: NAC domain-containing protein 17 | ||||
Swissprot | Q9XIC5 | 0.0 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | A0A087HSM1 | 0.0 | A0A087HSM1_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HSM1 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 0.0 | NAC domain containing protein 17 |