PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44645.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 331aa    MW: 38055.8 Da    PI: 7.7482
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44645.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.5e-36341252102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+e+++++sw ++ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+k+ll++i+
    KFK44645.1  34 FLTKTYQLVDDPETDHVVSWGDDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEYFKRGEKHLLCEIH 121
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    KFK44645.1 122 RRKT 125
                   **86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3826118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-6130123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.62E-3531123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MMVENSYGYG GSGNNGERIQ LMVEGQGKAV PAPFLTKTYQ LVDDPETDHV VSWGDDDTTF  60
IVWRPPEFAR DLLPNYFKHN NFSSFVRQLN TYGFRKIVPD RWEFANEYFK RGEKHLLCEI  120
HRRKTCQMIQ QQQQHSPFIT PPHIHPFSAF SLPPPPPRLS PSDVMDDHYW CDDSPPSRLQ  180
PPRATPTTVD AQLIALTEDN ERLRRSNTVL MSELAHMKKL YNDIIYFVQN HVKPVAAPSY  240
FQKQQQQPLD YYNTAPVTLN SPPTSQSSIT VLEDDNFDQS YLGFGRKTKL FGVSLQSSKK  300
RSHHFSDQSS KTRLVLDKSD LALNLMTAST R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-222512517131Heat shock factor protein 1
5d5v_B1e-222512517131Heat shock factor protein 1
5d5v_D1e-222512517131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298302KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44645.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589911.11e-178PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-169HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A087HR930.0A0A087HR93_ARAAL; Uncharacterized protein
STRINGA0A087HR930.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-164heat shock transcription factor B4