PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK44605.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 29527.8 Da PI: 5.6333 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.2 | 4.9e-17 | 67 | 120 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eql+ Le+ Fe +++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k KFK44605.1 67 KKRRLNMEQLKSLEKNFELGNKLESDRKLELARTLGLQPRQIAIWFQNRRARSK 120 456899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 121.9 | 3.1e-39 | 66 | 158 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eq+k+LE++Fe +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlE+dy++Lkr++d+lk+ ne L++++++L++++++ KFK44605.1 66 EKKRRLNMEQLKSLEKNFELGNKLESDRKLELARTLGLQPRQIAIWFQNRRARSKTKQLERDYDTLKRQFDSLKDANEILQTQNQKLQAQVMA 158 69**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.26E-18 | 55 | 124 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-17 | 60 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-16 | 65 | 126 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.08E-14 | 67 | 123 | No hit | No description |
Pfam | PF00046 | 1.9E-14 | 67 | 120 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.5E-6 | 93 | 102 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-6 | 102 | 118 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-15 | 122 | 162 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSCNNGLAFF PANFSLQNHH QEEEEDHHQD FHGFLGKRSP ITMQGFCNLE INGEEEFLDD 60 GSKMGEKKRR LNMEQLKSLE KNFELGNKLE SDRKLELART LGLQPRQIAI WFQNRRARSK 120 TKQLERDYDT LKRQFDSLKD ANEILQTQNQ KLQAQVMALK SREAIESINL NKETEDSCSN 180 KSENISGDMR PPGMDGQFTG SHHPPSSPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID 240 DQSGFWPWLD QQHYN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 122 | RRARSKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK44605.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415983.1 | 1e-161 | homeobox-leucine zipper protein ATHB-23 | ||||
Swissprot | Q8LFD3 | 1e-154 | ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23 | ||||
TrEMBL | A0A087HR53 | 0.0 | A0A087HR53_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HR53 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26960.1 | 1e-142 | homeobox protein 23 |
Publications ? help Back to Top | |||
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