PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44352.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18717.8 Da    PI: 9.9756
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44352.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.7e-161150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i+++s r vtf kR+ g+lKK +EL +LC+ +++ ii+s 
  KFK44352.1 11 ISDNSTRRVTFRKRKDGLLKKLHELTILCGLRACAIIYSD 50
                8999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.0E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.194150IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-21185IPR002100Transcription factor, MADS-box
CDDcd002664.54E-21285No hitNo description
PRINTSPR004041.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGRRKVTHQL ISDNSTRRVT FRKRKDGLLK KLHELTILCG LRACAIIYSD YKEGPEVWPN  60
RNEVRVLLNR LSELPVEKQT KYMMDQKDLM NRMIQDAKKK LEKEQMHSRA MELGMVASFD  120
DLNDADYSED LIKAADVVEK RIKVIRERIE AVESGAAVVK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLISDNSTRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44352.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416183.11e-104agamous-like MADS-box protein AGL80
TrEMBLA0A087HQF01e-114A0A087HQF0_ARAAL; Uncharacterized protein
STRINGA0A087HQF01e-115(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.27e-93AGAMOUS-like 87