PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK43703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | G2-like | ||||||||
Protein Properties | Length: 249aa MW: 28521.7 Da PI: 8.853 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 24 | 77 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+ave LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR KFK43703.1 24 PRLRWTPELHRSFVHAVELLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.165 | 20 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 20 | 77 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-22 | 24 | 76 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.97E-15 | 24 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-8 | 25 | 76 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRCGRSNDG GIGGVRPYVR SPVPRLRWTP ELHRSFVHAV ELLGGQYKAT PKLVLKIMDV 60 KGLTISHVKS HLQMYRGSRP SLLGKLESSS SSSRRRRRQD NEEDHLHDNL SVHARNDCLL 120 GFHSFNFREQ TSGTDNDDDD FLNIMNMERT KTFAGYGESI KFQSHHFLEA QSTKNHWENT 180 WRENKEEEEL SLSLSLNHPH NNQQRWRSHA SSSLSETSEA VSSPSIFRDC FVSSKIDLNL 240 NLSFSLLRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-19 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-19 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-19 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-19 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK43703.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630486 | 0.0 | AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866304.1 | 1e-142 | putative Myb family transcription factor At1g14600 isoform X1 | ||||
Swissprot | Q700D9 | 1e-134 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A087HNK1 | 0.0 | A0A087HNK1_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HNK0 | 1e-157 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 1e-116 | G2-like family protein |