PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43594.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 312aa    MW: 35579.2 Da    PI: 6.8634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43594.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05106125120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C+ C+k+F+r  n++ H+
  KFK43594.1 106 FSCSVCNKTFNRFNNMQMHM 125
                 89*****************9 PP
2zf-C2H210.90.0014191214123
                 EEET.TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                 ++C  +C k+F  + + ++H +++
  KFK43594.1 191 FRCRkKCEKTFAVRGDWRTHEKNC 214
                 89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.72E-5100128No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5106125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.263106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4177212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MYNNNQYCIS GDEDSVVLRL GPPGQQYHKP TNTKLPSSNQ EIDHQREFNN LPLTNPNGVT  60
VALHIGPPVS DKETLAGGNN QEGLTSRQGQ YWIPSLSQIL VGPTQFSCSV CNKTFNRFNN  120
MQMHMWGHGS QYRKGPESLR GTKSSSSILR LPCYCCAEGC KNNIDHPRSK PLKDFRTLQT  180
HYKRKHGAKP FRCRKKCEKT FAVRGDWRTH EKNCGKLWFC VCGSDFKHKR SLKDHVRAFG  240
DGHAAHTVGD RVLAIGDGED DDEDEEGEDE EDERDDEEDE EGGNEENGRG EKNYGIRYDH  300
FRRYGQFSNE NY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43594.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118090.0AJ311809.1 Arabidopsis thaliana mRNA for WIP6 protein (At1g13290 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417136.10.0zinc finger protein WIP6
SwissprotQ9FX680.0ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A087HN920.0A0A087HN92_ARAAL; Uncharacterized protein
STRINGA0A087HN920.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.10.0C2H2-like zinc finger protein