PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43528.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 192aa    MW: 20774.1 Da    PI: 4.791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43528.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-171362155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa+a++ a+++l+g
  KFK43528.1 13 PVYRGIR-CR-SGKWVSEIREPKK---TTRIWLGTYPTAEMAAAAYDVAALALKG 62
                68****9.55.6*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-101362IPR001471AP2/ERF domain
PROSITE profilePS5103220.4421470IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-181471IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-271471IPR001471AP2/ERF domain
SMARTSM003809.6E-291476IPR001471AP2/ERF domain
CDDcd000181.74E-171570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASAGSSNQK KDPVYRGIRC RSGKWVSEIR EPKKTTRIWL GTYPTAEMAA AAYDVAALAL  60
KGREAVLNFP GSAQSYPVPG STSAADIRTA AAAAAAAVKG CEEEEDEKEK TKKSSRSSSS  120
KSRARDYHVD YDMASSSWCG TGQFMDEEEV LNMPNLLANM AEGMMVAPPS WMDSPPSNDS  180
PENSNDENLW GY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1315701572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43528.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889943.12e-87ethylene-responsive transcription factor ERF027
SwissprotQ38Q391e-75ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLA0A087HN261e-138A0A087HN26_ARAAL; Uncharacterized protein
STRINGA0A087HN261e-139(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.18e-60ERF family protein