PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK42999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bZIP | ||||||||
Protein Properties | Length: 332aa MW: 36702.8 Da PI: 5.2353 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.7 | 6.8e-10 | 143 | 192 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + KFK42999.1 143 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLFQR 192 9****************************************998876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.3E-16 | 139 | 203 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.909 | 141 | 204 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.9E-8 | 143 | 198 | No hit | No description |
SuperFamily | SSF57959 | 1.62E-10 | 143 | 194 | No hit | No description |
Pfam | PF00170 | 3.2E-8 | 143 | 191 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.15E-21 | 144 | 193 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEKSDPPPSI TPSDPNPNPN PVPSSFHRRS RSDDMSMFMF MDPLISSSGA PPSSDDLPSD 60 DDLFSSFIDV DSLSSNPNLT FPNPSLCSNS VSGATPPPSS SRPRHRHSNS VDAGCAMYAG 120 EIMDAKKAMP PEKLSELWNI DPKRAKRILA NRQSAARSKE RKARYIQELE RKVQSLQTEA 180 TTLSAQLTLF QRDTNGLANE NTELKLRLQA MEQQAQLRNA LNEALRKEVE RMKMETGEMS 240 DHSDSFEMGM QQIQYSPSTF MAIPPYHGSM NGQDMQHQMH SSFNPMEMSN SQSVSEFLQN 300 GRLQGLEISS NSSSLVKSEG PSVSASESSS AY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00129 | DAP | Transfer from AT1G06850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK42999.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417873.1 | 1e-176 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 5e-82 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A087HLJ7 | 0.0 | A0A087HLJ7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HLJ7 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13555 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.1 | 1e-141 | basic leucine-zipper 52 |
Publications ? help Back to Top | |||
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