PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK42728.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 513aa MW: 56617.4 Da PI: 8.1622 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.7e-05 | 72 | 92 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H KFK42728.1 72 CEICGKGFQRDQNLQLHRRGH 92 *******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00024 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ KFK42728.1 146 WKCEKCSKRYAVQSDWKAHSKTC 168 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.42E-6 | 69 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.076 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.489 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 134 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.42E-6 | 141 | 166 | No hit | No description |
SMART | SM00355 | 130 | 146 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MIMNEDQTIS SSTGGYVQSS STTDHVLDHH EHESFNPPLA KKKRNLPGNP DPEAEVIALS 60 PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEVRKRV YVCPEKSCVH 120 HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTI 180 FSRRDSFITH RAFCDALAEE TARLNAASHL KSLAGNNLNY HYLMGTLIPS PPQQSPQQPS 240 FLFGPPQPQL NHHHFPIATT TFDQHQDVMK PASSLSLWMG GSINPHQQVT IDDRIAPHQP 300 QPQPESPQED YNWVFGNANN RGELITSSDS LITHENINTL VPSSKENANA DITSLSVPSL 360 FSSVDQITQD ANAAASAVAN MSATALLQKA AQMGATSSTP PTTTITTDQS AFLQCFTSKI 420 SDQGQIVEDS GSNKFFALFG SNSVGLMSNN GLHEIGNPRN GVTVVPGIDE LQNYPWKRRR 480 VESGEAGGGG QTRDFLGVGV QTMCHSSSIN GWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-36 | 142 | 209 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 6e-36 | 142 | 209 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 476 | 480 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK42728.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475014.1 | 0.0 | PREDICTED: zinc finger protein MAGPIE-like isoform X1 | ||||
Swissprot | Q9ZWA6 | 0.0 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A087HKS6 | 0.0 | A0A087HKS6_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HKS6 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3710 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 0.0 | C2H2 family protein |
Publications ? help Back to Top | |||
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