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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK42723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | C3H | ||||||||
Protein Properties | Length: 393aa MW: 43369.2 Da PI: 8.2879 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.5e-11 | 124 | 147 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ f+r+G C++Gd C FaHg KFK42723.1 124 GEVCPEFRRGGDCSRGDDCEFAHG 147 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.535 | 121 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-6 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 121 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 125 | 147 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-6 | 125 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5 | 157 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MDVVRPTVEI PPRKLLLSSK SFPGESSPRS SPRKHNWNNK IIKISEHDHQ EDGFNDENNN 60 KKEVKEYCYD SDTDDPYASD HFRMFEFKIR RCTRSRSHDW TDCPFAHPGE KARRRDPRRF 120 QYSGEVCPEF RRGGDCSRGD DCEFAHGVFE CWLHPIRYRT EACKDGKHCK RKVCFFAHSP 180 RQLRVLPPEN VSGGSASPSP GGKNPCCMFC SSSPTSTLLG NLSHLSRSPS LSPPLSPAHK 240 AAAFSRLRNR AASAVSAAAA AGSVNYKDVL SELVNSLDSM SLAEALQVSS SSSVTTPVSA 300 AAAAFASSCG FSNQRLHIQQ QQPQSSPSQF ALSPSTPSYL TNSPTANFFS DDFTPSRRRM 360 SNFPAVAGVR DKTSYEDGSC GDPDLGWVND LLT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK42723.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC003027 | 0.0 | AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418203.1 | 0.0 | zinc finger CCCH domain-containing protein 2 | ||||
Swissprot | Q9ZWA1 | 0.0 | C3H2_ARATH; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A087HKS1 | 0.0 | A0A087HKS1_ARAAL; Zinc finger ccch domain-containing protein 2-like | ||||
STRING | A0A087HKS1 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 1e-174 | C3H family protein |
Publications ? help Back to Top | |||
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