PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42573.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 267aa    MW: 29671.2 Da    PI: 8.301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42573.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039527123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C ksF +   L  H+r+H
  KFK42573.1  5 HKCKLCWKSFVNGRALGGHMRSH 27
                79********************9 PP
2zf-C2H213.20.00027157178223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +C+ Cgk+F++   L  H  +H
  KFK42573.1 157 TCETCGKVFKSYQALGGHRASH 178
                 6***********9999998887 PP
3zf-C2H213.50.00021207229123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k+Fs+   L  H r+H
  KFK42573.1 207 HECPICLKVFSSGQALGGHKRSH 229
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-8427No hitNo description
PROSITE profilePS5015710.471532IPR007087Zinc finger, C2H2
PfamPF139121.3E-6528IPR007087Zinc finger, C2H2
SMARTSM003550.03527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-8151178No hitNo description
PROSITE profilePS5015710.471156183IPR007087Zinc finger, C2H2
SMARTSM003550.58156178IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-10158180IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
PfamPF139121.2E-12207229IPR007087Zinc finger, C2H2
SMARTSM003550.084207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDEKHKCKLC WKSFVNGRAL GGHMRSHMLL HPLPSQPESA SSSMPDQDRE SETESSKKPT  60
RKRSRLNRRS TYVSLHHQRE EGEKKGETAA EVKTMIKPKS SQELSESCTE QEPMSSVSDA  120
ATTEEDVAFS LMMLSRDKWE EEEESDDERW DKKKQKTCET CGKVFKSYQA LGGHRASHKK  180
KKALEGSSSS LIDEKTNKKK KSSSSGHECP ICLKVFSSGQ ALGGHKRSHA ATGSDSSPAR  240
RGMIGLIDLN LPAPSEEEDL VSSVFNA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179200KKKALEGSSSSLIDEKTNKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42573.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934212e-50AB493421.1 Arabidopsis thaliana At1g02030 mRNA for hypothetical protein, partial cds, clone: RAAt1g02030.
GenBankCP0026842e-50CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899592e-50U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
GenBankX986692e-50X98669.1 A.thaliana zat1 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418480.11e-109zinc finger protein ZAT1
SwissprotQ390921e-109ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBLA0A087HKC10.0A0A087HKC1_ARAAL; Uncharacterized protein
STRINGA0A087HKC10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-102C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]