PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42490.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 271aa    MW: 31184.7 Da    PI: 7.1429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42490.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.85.7e-2951356127
         NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
                  F+P deelv++yL++k+++k   +e+ i+ev+i+++eP dLp  +k e++  wyf s+ +k   + kr++ra ++g Wk tg++ +v++ +g+ +glk
  KFK42490.1   5 TFNPPDEELVSYYLNNKITNKYDLEEKQIHEVNICHHEPADLPGLAKIESShTWYFISPVEK-FGKLKRTKRASRTGHWKITGNSGTVKDVDGNPIGLK 102
                 7*******************99666688***************6444544526777666655.67889******************************* PP

         NAM 104 ktLvfy.........kgrapkgektdWvmheyr 127
                 k Lvf          + ++ + ++ +W++he++
  KFK42490.1 103 KFLVFQesknkrssnSSSTTTQQHISWIIHEFH 135
                 ******65543332212333334668******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.0641154IPR003441NAC domain
PfamPF023652.1E-174135IPR003441NAC domain
SuperFamilySSF1019411.83E-324154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSRYTFNPPD EELVSYYLNN KITNKYDLEE KQIHEVNICH HEPADLPGLA KIESSHTWYF  60
ISPVEKFGKL KRTKRASRTG HWKITGNSGT VKDVDGNPIG LKKFLVFQES KNKRSSNSSS  120
TTTQQHISWI IHEFHSFIHH PNKDAFVICK LMKKTRTRRS GAVAEASSAA TDLSPIFTSA  180
PILNHPQMLT ENKNIVEDYG GDYCNDLEEF LPEYHNTNWL NRSHQYSNQS DHFHWETFAD  240
ISHHLELGEY WNSEAVVGSS NVPTTKSKYV E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-14415424168NAC domain-containing protein 19
3swm_B5e-14415424168NAC domain-containing protein 19
3swm_C5e-14415424168NAC domain-containing protein 19
3swm_D5e-14415424168NAC domain-containing protein 19
3swp_A5e-14415424168NAC domain-containing protein 19
3swp_B5e-14415424168NAC domain-containing protein 19
3swp_C5e-14415424168NAC domain-containing protein 19
3swp_D5e-14415424168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222877e-59AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026867e-59CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.11e-124PREDICTED: NAC domain-containing protein 62 isoform X1
TrEMBLA0A087HK380.0A0A087HK38_ARAAL; Uncharacterized protein
STRINGA0A087HK380.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.15e-76NAC domain containing protein 49