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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK42455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 226aa MW: 25400.8 Da PI: 10.399 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H KFK42455.1 65 FSCNYCQRKFYSSQALGGHQNAH 87 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.62E-7 | 62 | 92 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDSSIKVDQE MLQLIKKRTH QDLELGLTLL PRGEASSELN LIDSFKKISS STSNHQEHLE 60 DPKVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLAKRGHYY KMSVSSSSPS SAFAFGHGSV 120 RRFASMASLP LHGSASHRST LGIQVHSTIQ KPYLGRQTTS LSHVFKQSIH QKPTIGKMLP 180 EKFHLEVAGS NNSNVIASSK LESFGYFKNK QEDHNQFKKI DLTLKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 19 | KKRTH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK42455.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_178188.1 | 1e-121 | zinc-finger protein 1 | ||||
Swissprot | Q42485 | 1e-122 | ZFP1_ARATH; Zinc finger protein 1 | ||||
TrEMBL | A0A087HK03 | 1e-165 | A0A087HK03_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HK03 | 1e-166 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11858 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 1e-119 | zinc-finger protein 1 |
Publications ? help Back to Top | |||
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