PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42100.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 315aa    MW: 37412.7 Da    PI: 8.6315
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42100.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.82.2e-2145133186
    trihelix   1 rWtkqevlaLiearremee..rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                 +W ++ v+++i+a ++++e  ++++ +  +++W+ vsk+m+erg+++s++qC++k+++lnkrykk++e+ +++  ++++++  ++d+++
  KFK42100.1  45 QWIDKSVKLMITALSYLNEedSMKKHSVLQGKWKLVSKAMEERGYHVSSQQCEDKFNDLNKRYKKLNEMLGRGiCCDVVENPMLLDKID 133
                 7************9976551156677888*******************************************96688888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-1844159No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEGNCSNVGF NLHQNRNRNR NQACVVDNNV EKAKNSRSED DVKSQWIDKS VKLMITALSY  60
LNEEDSMKKH SVLQGKWKLV SKAMEERGYH VSSQQCEDKF NDLNKRYKKL NEMLGRGICC  120
DVVENPMLLD KIDYLNEVEK DEVRRILSSK HLFYEEMCSY HNGNRLHLPH DLALQRFLRL  180
MLRNRDDDYG VLGGDLKRLR RSQSDEDVGQ SNGTNSRECD KGYENRGMSV ESRKVASLPK  240
QWIESRYIEL EEQKLRIRAE LMELERQRLK WEMFSKKRDE KLEKMRMENE KMKLENEMMT  300
LELKRVELGA RFMKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00242DAPTransfer from AT1G76870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001323232.11e-120transcription factor
RefseqNP_001323233.11e-120transcription factor
RefseqNP_177813.11e-120transcription factor
TrEMBLA0A087HIZ80.0A0A087HIZ8_ARAAL; Uncharacterized protein
STRINGA0A087HIZ80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-104