PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

FAR1

Protein Properties

Length: 732aa MW: 84794.7 Da PI: 6.9864

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK42054.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	9.1e-27	12	97	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk+++dgkw+v+++++eHnHel p KFK42054.1 12 FYKDYAKSIGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLP 97 9**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-24	12	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-28	213	305	IPR018289	MULE transposase domain
Pfam	PF04434	3.1E-10	491	525	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.868	491	527	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	502	529	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MEFETHEDAY LFYKDYAKSI GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RASPKIGCKA SMHVKRRQDG KWYVYSFVKE HNHELLPEQA HFFRSHRENN TEFVKSDSRF 120 RKKKNNHVSG SKHLSAYHDL SFLDGFMRNQ HDKGRRLAID NCDVEILLEF FTRMQEENCK 180 FFYAVDFSED HVLRNVFWVD AKGVEDYKSF SDVVSFDTTY FVSKYRIPLV VFVGVNHHEQ 240 PVLLGCGLVA DDTVYSYVWL MQSWLVAMGG LMPKVMLTDQ NTAIKAAIAA VLPETRHCYC 300 LWHVLDRLPR NLDYWSMWQD TFMKKLFKCI YKSWSEEEFD RRWLKLIDKF HLRDVQWMRS 360 LYEERKFWAP TFMRGVTFAG LSTRNRSESV NSLFDRYIQA ETSLKEFLEG YGIMLEDRYE 420 EEAKADFDAW HEAPEFKSPS PFEKQMLLVY THEIFRKFQL EVLGAAACHL TKESEEGTTY 480 SVKDFEDDQK YLVDWDESNS DIYCSCRSFE YKGYLCRHAI VVLQMSGVFT IPINYVLQRW 540 TNAARNRHQI SGNLEVVQSN IHRFNDLCRR AIILGEEGSL SQESYDIAMF AMKEAFKQCA 600 IKVNTIEYPA MCEEAATQPG DSVQEGSQYG STSKQIGLEP NIHAGNAPGQ AETRRDKRSS 660 LNNASKRAKQ VTQSGTVGEG SQEGYQQAAP RPVQAVMAGQ FHNTMVGVFQ NVIPTEFHNI 720 QTTNMHQNNP PG

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MEFETHEDAY LFYKDYAKSI GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RASPKIGCKA SMHVKRRQDG KWYVYSFVKE HNHELLPEQA HFFRSHRENN TEFVKSDSRF  120
RKKKNNHVSG SKHLSAYHDL SFLDGFMRNQ HDKGRRLAID NCDVEILLEF FTRMQEENCK  180
FFYAVDFSED HVLRNVFWVD AKGVEDYKSF SDVVSFDTTY FVSKYRIPLV VFVGVNHHEQ  240
PVLLGCGLVA DDTVYSYVWL MQSWLVAMGG LMPKVMLTDQ NTAIKAAIAA VLPETRHCYC  300
LWHVLDRLPR NLDYWSMWQD TFMKKLFKCI YKSWSEEEFD RRWLKLIDKF HLRDVQWMRS  360
LYEERKFWAP TFMRGVTFAG LSTRNRSESV NSLFDRYIQA ETSLKEFLEG YGIMLEDRYE  420
EEAKADFDAW HEAPEFKSPS PFEKQMLLVY THEIFRKFQL EVLGAAACHL TKESEEGTTY  480
SVKDFEDDQK YLVDWDESNS DIYCSCRSFE YKGYLCRHAI VVLQMSGVFT IPINYVLQRW  540
TNAARNRHQI SGNLEVVQSN IHRFNDLCRR AIILGEEGSL SQESYDIAMF AMKEAFKQCA  600
IKVNTIEYPA MCEEAATQPG DSVQEGSQYG STSKQIGLEP NIHAGNAPGQ AETRRDKRSS  660
LNNASKRAKQ VTQSGTVGEG SQEGYQQAAP RPVQAVMAGQ FHNTMVGVFQ NVIPTEFHNI  720
QTTNMHQNNP PG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK42054.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020890971.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_020890972.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A087HIV2	0.0	A0A087HIV2_ARAAL; Uncharacterized protein
STRING	A0A087HIV3	0.0	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]