PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41969.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 399aa    MW: 43860.6 Da    PI: 8.6734
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41969.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.6e-12326327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                 elCr+f+r G C+yG++C+F H++
  KFK41969.1  3 KELCRNFQR-GSCRYGENCRFLHPQ 26
                69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-8126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.15127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-8326IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MRKELCRNFQ RGSCRYGENC RFLHPQQVTQ QANNKPNNPF GFGSQSNNNQ QQQQQQKSLN  60
PFGFGVQGGG SNGTSNQFQA FDNKWTRTPS TSSGGGGGVS AQQSGKQTQQ SEHKCTDPAA  120
CKKIMQDDFK NERPIWKLSC YGHWKHLPCD ISGDISYEEL RLIAYEEAKR GVPLHSIVAR  180
ERNLHENKMR EFEAFLQNPY KGSVTVNQNP FPATTPSIFP PANLTNSPPA FSAFNQQPVL  240
PNTNTVPPNP FARFNQQPNA FSVNTPQPVP SGPPGFQSNP PVIFKPASFG PGPGLFTTLQ  300
NNNIFPSVTP TPAPNAFQNN NTFPSVTPTP APNTFQNNQN AFNFNVPVAP FTTPVIPTTN  360
TSPGTELQTD VASVDTSVWL KEKWNPGEIP EQAPPDAFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012531.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS31e-177C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A087HIL70.0A0A087HIL7_ARAAL; Uncharacterized protein
STRINGA0A087HIL70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-148C3H family protein