PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41962.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 98aa    MW: 11324.8 Da    PI: 9.9759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41962.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.4e-081154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT    + + +a + + ++   +W+ +a+ +g g+t++++k ++
       KFK41962.1 11 TWTFKQNKMFERALAVYDKDtpdRWHNVAKAVG-GKTAEEVKRHY 54
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.319458IPR017877Myb-like domain
SMARTSM007174.9E-7860IPR001005SANT/Myb domain
SuperFamilySSF466895.38E-131065IPR009057Homeodomain-like
PfamPF002491.1E-51154IPR001005SANT/Myb domain
CDDcd001673.04E-61154No hitNo description
Gene3DG3DSA:1.10.10.601.9E-41159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASNSRSSSS TWTFKQNKMF ERALAVYDKD TPDRWHNVAK AVGGKTAEEV KRHYDILVED  60
LINIETGRVP LPNYKKTYES NSRGLNDFDS RLMKNLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-33198192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3953461e-92DQ395346.1 Arabidopsis thaliana RAD-like protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106182.16e-60PREDICTED: protein RADIALIS-like 6
RefseqXP_013590823.16e-60PREDICTED: protein RADIALIS-like 6
RefseqXP_013652446.16e-60protein RADIALIS-like 6
RefseqXP_013700871.16e-60protein RADIALIS-like 6
SwissprotQ1A1733e-60RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A087HIL04e-67A0A087HIL0_ARAAL; Uncharacterized protein
STRINGA0A087HIL07e-68(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-57RAD-like 6