PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41872.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 650aa    MW: 74465 Da    PI: 4.8243
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41872.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027621640221
                 EETTTTEEESSHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                 +C +Cg+ F ++  L++Hi 
  KFK41872.1 621 ECDKCGEEFESRTKLHKHIA 640
                 5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1109.9E-23587IPR001623DnaJ domain
SuperFamilySSF465654.71E-227114IPR001623DnaJ domain
SMARTSM002717.7E-211174IPR001623DnaJ domain
CDDcd062573.60E-151271IPR001623DnaJ domain
PROSITE profilePS5007618.8211282IPR001623DnaJ domain
PfamPF002261.3E-191379IPR001623DnaJ domain
PRINTSPR006259.6E-141432IPR001623DnaJ domain
PRINTSPR006259.6E-143247IPR001623DnaJ domain
PRINTSPR006259.6E-145474IPR001623DnaJ domain
PROSITE patternPS0063605978IPR018253DnaJ domain, conserved site
SuperFamilySSF576673.76E-14299351No hitNo description
SMARTSM004511.3E-6307341IPR003604Zinc finger, U1-type
PfamPF121713.6E-10309335IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82310334IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280312334IPR007087Zinc finger, C2H2
SMARTSM003551.7620644IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743620649IPR007087Zinc finger, C2H2
PROSITE patternPS000280622644IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MATTSSRSEK RCLYEVLGIS KESSPDEIRS SYRRLALLRH PDKLIKAGNI TESEATAQFQ  60
ELVHAYEVLS DPKERAWYDS HRSQILFADH GSSGGTKSRG MPGGSVPDLF AFFSPTVYSG  120
YSDTGKGFYK VYFDVFNSVY LNEINFVRTL GLSIDSVKEA PIMGNLESPY AQATAFYNYW  180
LGFSTVMDFC WVDEWDAMGG PNRKSRRLME EANKKVRKKA KREYNDTVRS LAEFVKKRDK  240
RVIDMMIKKN AEMEKKKAEE RERKKKMEKE RLEKAMNYEE PDWAKDEEEE GEFDVVEEED  300
SDDARRRNQL YCIVCSKKFK SEKQWKNHEQ SKKHKEKVAE LREHFLEEDK EIEDEEEIDM  360
PLESPETVKG LDEKLQAGLN IDEEDGEESD NEEVVGEADE TDEEYFMAEE DVKESGEDED  420
EDDDEEMSLL KKMVSGQKKK QKNVVLMKED EAQAEVESDT ADFSEFDNQK STGRNKKGKK  480
ERNKRNAGKD MTDDASKVQI PGDDGNTDDN VDATDSASGA FEDSQKDEPV MEYDNRKSTG  540
RRRRSKKDKD RNNLGGLTGK SSEADDTQAK NGDMDESHTE AVKDQSDYID YVKEHKKGAR  600
SKKSTRGMKA KGTSKKNSNN ECDKCGEEFE SRTKLHKHIA DTGHATVKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bq0_A5e-121081268DNAJ
1xbl_A5e-121081268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221KKVRKKAKR
2540547RRRRSKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390445.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A087HIC00.0A0A087HIC0_ARAAL; Uncharacterized protein
STRINGA0A087HIC00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein