PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41621.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 389aa    MW: 44286.2 Da    PI: 7.8278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41621.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00122042123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++Cg s s k++ ++Hi +H
  KFK41621.1 20 YLCQYCGISRSKKYLITSHILSH 42
                56*******************96 PP
2zf-C2H218.65e-066688123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ Cg  F+ + +Lk+H+ +H
  KFK41621.1 66 HNCQECGAEFKKPAHLKQHMLSH 88
                67*******************99 PP
3zf-C2H215.55.1e-05110134123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C   dC  s++rk++L+rH+ tH
  KFK41621.1 110 FTCYvdDCAASYRRKDHLNRHLLTH 134
                 789999*****************99 PP
4zf-C2H221.94.5e-07191215123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   Cgk F+ +s+L++H+ +H
  KFK41621.1 191 HVCQevGCGKAFRYPSQLQKHQDSH 215
                 789999****************998 PP
5zf-C2H222.13.9e-07281306123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 +kC+   C+ +Fs +snL++H++  H
  KFK41621.1 281 FKCEveGCSSTFSKPSNLQKHMKAvH 306
                 89********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355252042IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.0E-866134No hitNo description
Gene3DG3DSA:3.30.160.601.3E-566109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00696688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1576693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
PROSITE profilePS501579.91110139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-9110136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11110134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
SMARTSM003550.24139164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808139169IPR007087Zinc finger, C2H2
PROSITE patternPS000280141164IPR007087Zinc finger, C2H2
SuperFamilySSF576675.03E-7187217No hitNo description
Gene3DG3DSA:3.30.160.606.5E-9187215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949191220IPR007087Zinc finger, C2H2
SMARTSM003550.0022191215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193215IPR007087Zinc finger, C2H2
SMARTSM003554.8223248IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-4225246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280225248IPR007087Zinc finger, C2H2
SMARTSM0035525251272IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.36E-10262319No hitNo description
PROSITE profilePS5015713.027281311IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-8281306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.9E-5281306IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283306IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4307333IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.3312338IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280314338IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGEESNIDMD ASLIKDIRKY LCQYCGISRS KKYLITSHIL SHHKMEMEEE RDDEACEVEE  60
EALGKHNCQE CGAEFKKPAH LKQHMLSHSI EGDLLRSSTM LASITQMRPF TCYVDDCAAS  120
YRRKDHLNRH LLTHKGKLFK CPMENCKSEF SVQGNVGRHI KEMHKNGDGS KDDIGNGDSH  180
PTEGSIGQKP HVCQEVGCGK AFRYPSQLQK HQDSHVKLDS VEAFCSEPGC MKYFTNDECL  240
KAHIRSCHQH VNCEICGSKH LKKNIKRHLR THDEDSAPGV FKCEVEGCSS TFSKPSNLQK  300
HMKAVHEDIR PFICGFPGCG MRFAYKHVRN NHENSGSHVY TCGDFVATDE NFTSRPRGGL  360
KRKQVTAEML IRKRVMPPQF ESQEEHKTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3m_C7e-14534119309Zinc finger protein 568
5wjq_D5e-14203419284Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415924.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A087HHL90.0A0A087HHL9_ARAAL; Uncharacterized protein
STRINGA0A087HHL90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA