PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41558.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 733aa    MW: 82408.7 Da    PI: 6.891
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41558.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-192579256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                rk ++++++q+e+Le++F+++++p++ +r+ L ++l+L+ +q+k+WFqN+R++ k
  KFK41558.1 25 RKYHRHSNSQIERLEAYFKECPHPDELQRQNLGEELNLSPKQIKFWFQNKRTQTK 79
                788999*********************************************9987 PP
2START106.83.6e-342454653206
                 HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 a+ a  e++++++ eep+W+kss       + +n+++  +k    ++     + e +++++vv+m++ +l   ++++  +W + ++    +a+t+ v++
  KFK41558.1 245 ALNAVSEVMRLIQTEEPMWTKSSidgrpviDPDNYEKMFTKN---HFkspnARPESSKDVVVVPMDARTLIDVFFNTE-KWARVFPtivnEAKTIHVLE 339
                 6788999*****************999777555555555444...334446799************************.***********999999999 PP

                 TT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.H CS
       START  87 sg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.h 178
                 s      ++l lm+ +l  lsplvp R+f+++R+++++g+  w+i+dvS + ++   e  +   + ++pSg li+ ++n +skvtw+ehv  ++++  h
  KFK41558.1 340 SMdqegqTFLKLMYEQLHILSPLVPpREFMVLRCCQRMGENLWMIADVSYNLPNIEFE-FPTPICFKRPSGVLIQALPNARSKVTWMEHVVIEEKMRmH 437
                 888899*********************************************9999874.55555688*****************************99* PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                  l++ +v+ g   ga++w+ tl+r ce+
  KFK41558.1 438 RLYKDVVGGGFGYGARRWTVTLERMCER 465
                 **************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-181182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-192087IPR009057Homeodomain-like
PROSITE profilePS5007116.7142181IPR001356Homeobox domain
SMARTSM003895.9E-172385IPR001356Homeobox domain
PfamPF000461.0E-162579IPR001356Homeobox domain
CDDcd000866.28E-172582No hitNo description
PROSITE profilePS5084841.119234468IPR002913START domain
SuperFamilySSF559617.28E-25237466No hitNo description
CDDcd088756.83E-86238464No hitNo description
SMARTSM002347.3E-13243465IPR002913START domain
PfamPF018522.2E-28245465IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-7298426IPR023393START-like domain
SuperFamilySSF559614.81E-7487686No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MDSSRDDSSS DERETSINTN SNQDRKYHRH SNSQIERLEA YFKECPHPDE LQRQNLGEEL  60
NLSPKQIKFW FQNKRTQTKA QNERSENAAL KAANMKIVRD NEVMRNALET VVCPPCGGPR  120
LGKEERELNL QKLRLKNAAL KEQHEKLKSY VNQLGGQFPS SDASLPNIHG PSSYATTSTD  180
NRHVLYGSSS QNVLEPPSIL SGPNTHENAN ITQVPQPPQP QRQPLQLQHF QPLSQVEKIM  240
MSETALNAVS EVMRLIQTEE PMWTKSSIDG RPVIDPDNYE KMFTKNHFKS PNARPESSKD  300
VVVVPMDART LIDVFFNTEK WARVFPTIVN EAKTIHVLES MDQEGQTFLK LMYEQLHILS  360
PLVPPREFMV LRCCQRMGEN LWMIADVSYN LPNIEFEFPT PICFKRPSGV LIQALPNARS  420
KVTWMEHVVI EEKMRMHRLY KDVVGGGFGY GARRWTVTLE RMCERLSLSS ISAFPNTDHG  480
GAVKFTEGRK SVLNLGERMI KNFAWTLKMS KKLDFSQLSE TNNSGVRVSV RVNKEDGQPP  540
GLVVCACSSL SLPKPPLEVY KFLKEVEHRH QWDVLCHGNP AAEVARFFTG TDLTNCVDVL  600
QPSGATMPSE MMIIQDGFID ALGGMVVYAP MDINTAYSAL LGQVDPAGIS ILPSGFVISL  660
DGRPTPNTQL EGGRDHSTTL LTVAFQILVG RGRTYAEDTN MDESTTAVNT LVSSTVQRIK  720
AMLNCQDGQR ETS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41558.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400265.10.0homeobox-leucine zipper protein HDG10
SwissprotQ9FFI00.0HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBLA0A087HHF60.0A0A087HHF6_ARAAL; Uncharacterized protein
STRINGA0A087HHF60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.10.0homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]