PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

WRKY

Protein Properties

Length: 272aa MW: 31274.4 Da PI: 7.8325

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK41402.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	82.8	3.5e-26	193	252	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSS.TTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaed.pkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ed ++ +tYeg+H+h+ KFK41402.1 193 NDGCQWRKYGQKTAKTNPLPRAYYRCSMStNCPVRKQVQRCGEDdNSDYMTTYEGTHDHP 252 8*************************99******9765166799*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-28	177	254	IPR003657	WRKY domain
PROSITE profile	PS50811	24.684	187	254	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-24	187	254	IPR003657	WRKY domain
SMART	SM00774	6.4E-31	192	253	IPR003657	WRKY domain
Pfam	PF03106	6.9E-25	193	252	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MAESDKEEEL DVTKAKVEKV REENLKLKLL LSTILTDYNS LQMHVSKVLQ QQRGASMELD 60 INHHDDFGVD ISLRLGRSEL KLSEKDEELE KMNLEKISEK NKEGSEKKRS AFGLDFRIQS 120 FERRPNTNET MKLGYLSRGV KEANVVTKSV PSRRDVKTTR NENQQEVLET LEQPSLKKTR 180 VCVKATCEDP LINDGCQWRK YGQKTAKTNP LPRAYYRCSM STNCPVRKQV QRCGEDDNSD 240 YMTTYEGTHD HPLPMEATSP PRIVLLHQTV TP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-18	179	254	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK41402.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013701040.1	1e-132	probable WRKY transcription factor 36 isoform X1
Swissprot	Q9CAR4	1e-120	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	A0A087HH00	0.0	A0A087HH00_ARAAL; Uncharacterized protein
STRING	A0A087HH00	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	1e-112	WRKY DNA-binding protein 36

Publications ? help Back to Top
Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]