PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41402.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 272aa    MW: 31274.4 Da    PI: 7.8325
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41402.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.83.5e-26193252259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSS.TTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaed.pkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ed ++   +tYeg+H+h+
  KFK41402.1 193 NDGCQWRKYGQKTAKTNPLPRAYYRCSMStNCPVRKQVQRCGEDdNSDYMTTYEGTHDHP 252
                 8***************************99**********9765166799*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28177254IPR003657WRKY domain
PROSITE profilePS5081124.684187254IPR003657WRKY domain
SuperFamilySSF1182901.83E-24187254IPR003657WRKY domain
SMARTSM007746.4E-31192253IPR003657WRKY domain
PfamPF031066.9E-25193252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAESDKEEEL DVTKAKVEKV REENLKLKLL LSTILTDYNS LQMHVSKVLQ QQRGASMELD  60
INHHDDFGVD ISLRLGRSEL KLSEKDEELE KMNLEKISEK NKEGSEKKRS AFGLDFRIQS  120
FERRPNTNET MKLGYLSRGV KEANVVTKSV PSRRDVKTTR NENQQEVLET LEQPSLKKTR  180
VCVKATCEDP LINDGCQWRK YGQKTAKTNP LPRAYYRCSM STNCPVRKQV QRCGEDDNSD  240
YMTTYEGTHD HPLPMEATSP PRIVLLHQTV TP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-18179254174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701040.11e-132probable WRKY transcription factor 36 isoform X1
SwissprotQ9CAR41e-120WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLA0A087HH000.0A0A087HH00_ARAAL; Uncharacterized protein
STRINGA0A087HH000.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-112WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]